Beyond the thale: comparative genomics and genetics of Arabidopsis relatives

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

(2015) Eva-Maria Willing et al.   Nature Plants

Repeated Evolutionary Changes of Leaf Morphology Caused by Mutations to a Homeobox Gene

(2014) Adrien Sicard et al.   CURRENT BIOLOGY

Temporal Control of Leaf Complexity by miRNA-Regulated Licensing of Protein Complexes

(2014) Ignacio Rubio-Somoza et al.   CURRENT BIOLOGY

Ecological genomics and process modeling of local adaptation to climate

(2014) Cynthia Weinig et al.   CURRENT OPINION IN PLANT BIOLOGY

Evolutionary shifts to self-fertilisation restricted to geographic range margins in North AmericanArabidopsis lyrata

(2014) P. C. Griffin et al.   ECOLOGY LETTERS

The evolution of selfing from outcrossing ancestors in Brassicaceae: what have we learned from variation at theS-locus?

(2014) X. Vekemans et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Live and let die: centromere loss during evolution of plant chromosomes

(2014) Martin A. Lysak   NEW PHYTOLOGIST

Zinc and cadmium hyperaccumulation act as deterrents towards specialist herbivores and impede the performance of a generalist herbivore

(2014) Ardeshir Kazemi-Dinan et al.   NEW PHYTOLOGIST

Regulation of the KNOX-GA Gene Module Induces Heterophyllic Alteration in North American Lake Cress

(2014) Hokuto Nakayama et al.   PLANT CELL

The BOY NAMED SUE Quantitative Trait Locus Confers Increased Meiotic Stability to an Adapted Natural Allopolyploid of Arabidopsis

(2014) I. M. Henry et al.   PLANT CELL

Cardamine hirsuta: a versatile genetic system for comparative studies

(2014) Angela S. Hay et al.   PLANT JOURNAL

Leaf Shape Evolution Through Duplication, Regulatory Diversification, and Loss of a Homeobox Gene

(2014) D. Vlad et al.   SCIENCE

Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization

(2014) Danelle K. Seymour et al.   PLoS Genetics

A world-wide perspective on crucifer speciation and evolution: phylogenetics, biogeography and trait evolution in tribe Arabideae

(2013) Robert Karl et al.   ANNALS OF BOTANY

Meiotic Adaptation to Genome Duplication in Arabidopsis arenosa

(2013) Levi Yant et al.   CURRENT BIOLOGY

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

(2013) Quan Long et al.   NATURE GENETICS

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions

(2013) Annabelle Haudry et al.   NATURE GENETICS

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

(2013) Tanja Slotte et al.   NATURE GENETICS

BrassiBase: Introduction to a Novel Knowledge Database on Brassicaceae Evolution

(2013) Markus Kiefer et al.   PLANT AND CELL PHYSIOLOGY

Root Transcript Profiling of Two Rorippa Species Reveals Gene Clusters Associated with Extreme Submergence Tolerance

(2013) R. Sasidharan et al.   PLANT PHYSIOLOGY

The Conserved Chimeric Transcript UPGRADE2 Is Associated with Unreduced Pollen Formation and Is Exclusively Found in Apomictic Boechera Species

(2013) M. Mau et al.   PLANT PHYSIOLOGY

A Conserved Apomixis-Specific Polymorphism Is Correlated with Exclusive Exonuclease Expression in Premeiotic Ovules of Apomictic Boechera Species

(2013) J. M. Corral et al.   PLANT PHYSIOLOGY

Molecular Basis of Age-Dependent Vernalization in Cardamine flexuosa

(2013) C.-M. Zhou et al.   SCIENCE

Mechanisms of Age-Dependent Response to Winter Temperature in Perennial Flowering of Arabis alpina

(2013) S. Bergonzi et al.   SCIENCE

Secondary Evolution of a Self-Incompatibility Locus in the Brassicaceae Genus Leavenworthia

(2013) Sier-Ching Chantha et al.   PLOS BIOLOGY

Genomic Identification of Founding Haplotypes Reveals the History of the Selfing Species Capsella rubella

(2013) Yaniv Brandvain et al.   PLoS Genetics

Hard Selective Sweep and Ectopic Gene Conversion in a Gene Cluster Affording Environmental Adaptation

(2013) Marc Hanikenne et al.   PLoS Genetics

Independent FLC Mutations as Causes of Flowering-Time Variation in Arabidopsis thaliana and Capsella rubella

(2012) Y.-L. Guo et al.   GENETICS

Variation in HMA4 gene copy number and expression among Noccaea caerulescens populations presenting different levels of Cd tolerance and accumulation

(2012) Adrian R. Craciun et al.   JOURNAL OF EXPERIMENTAL BOTANY

‘Missing link’ speciesCapsella orientalisandCapsella thracicaelucidate evolution of model plant genusCapsella(Brassicaceae)

(2012) HERBERT HURKA et al.   MOLECULAR ECOLOGY

Elevated Nicotianamine Levels in Arabidopsis halleri Roots Play a Key Role in Zinc Hyperaccumulation

(2012) U. Deinlein et al.   PLANT CELL

SIMPLE LEAF3encodes a ribosome-associated protein required for leaflet development inCardamine hirsuta

(2012) Evangelia Kougioumoutzi et al.   PLANT JOURNAL

Insights into salt tolerance from the genome ofThellungiella salsuginea

(2012) Hua-Jun Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Gain-of-Function Polymorphism Controlling Complex Traits and Fitness in Nature

(2012) K. V. S. K. Prasad et al.   SCIENCE

PEP1 of Arabis alpina Is Encoded by Two Overlapping Genes That Contribute to Natural Genetic Variation in Perennial Flowering

(2012) Maria C. Albani et al.   PLoS Genetics

Recent Loss of Self-Incompatibility by Degradation of the Male Component in Allotetraploid Arabidopsis kamchatica

(2012) Takashi Tsuchimatsu et al.   PLoS Genetics

Genetic Adaptation Associated with Genome-Doubling in Autotetraploid Arabidopsis arenosa

(2012) Jesse D. Hollister et al.   PLoS Genetics

The selfing syndrome: a model for studying the genetic and evolutionary basis of morphological adaptation in plants

(2011) Adrien Sicard et al.   ANNALS OF BOTANY

GENETIC ARCHITECTURE AND ADAPTIVE SIGNIFICANCE OF THE SELFING SYNDROME INCAPSELLA

(2011) Tanja Slotte et al.   EVOLUTION

Demographic Signatures Accompanying the Evolution of Selfing in Leavenworthia alabamica

(2011) J. W. Busch et al.   MOLECULAR BIOLOGY AND EVOLUTION

Boechera, a model system for ecological genomics

(2011) CATHERINE A. RUSHWORTH et al.   MOLECULAR ECOLOGY

Contrasting demographic history and population structure in Capsella rubella and Capsella grandiflora, two closely related species with different mating systems

(2011) KATE R. ST. ONGE et al.   MOLECULAR ECOLOGY

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

The genome of the extremophile crucifer Thellungiella parvula

(2011) Maheshi Dassanayake et al.   NATURE GENETICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Genetics, Evolution, and Adaptive Significance of the Selfing Syndrome in the GenusCapsella

(2011) Adrien Sicard et al.   PLANT CELL

Genetic dissection of basal defence responsiveness in accessions of Arabidopsis thaliana

(2011) SHAKOOR AHMAD et al.   PLANT CELL AND ENVIRONMENT

Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics

(2011) D. Weigel   PLANT PHYSIOLOGY

Does Speciation between Arabidopsis halleri and Arabidopsis lyrata Coincide with Major Changes in a Molecular Target of Adaptation?

(2011) Camille Roux et al.   PLoS One

Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus

(2011) Z. Xiong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recently Formed Polyploid Plants Diversify at Lower Rates

(2011) I. Mayrose et al.   SCIENCE

Metal Hyperaccumulation in Plants

(2010) Ute Krämer   Annual Review of Plant Biology

The evolutionary history of the Arabidopsis lyrata complex: a hybrid in the amphi-Beringian area closes a large distribution gap and builds up a genetic barrier

(2010) Roswitha Schmickl et al.   BMC EVOLUTIONARY BIOLOGY

Arabidopsis thaliana Leaf Form Evolved via Loss of KNOX Expression in Leaves in Association with a Selective Sweep

(2010) Paolo Piazza et al.   CURRENT BIOLOGY

RECONSTRUCTING ORIGINS OF LOSS OF SELF-INCOMPATIBILITY AND SELFING IN NORTH AMERICAN ARABIDOPSIS LYRATA: A POPULATION GENETIC CONTEXT

(2010) John Paul Foxe et al.   EVOLUTION

Evolutionary dynamics of mating system shifts in Arabidopsis lyrata

(2010) Y. WILLI et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Genetic architecture of zinc hyperaccumulation in Arabidopsis halleri: the essential role of QTL × environment interactions

(2010) Hélène Frérot et al.   NEW PHYTOLOGIST

The relative importance of factors determining genetic drift: mating system, spatial genetic structure, habitat and census size in Arabidopsis lyrata

(2010) Yvonne Willi et al.   NEW PHYTOLOGIST

Quantitative trait loci analysis of mineral element concentrations in an Arabidopsis halleri × Arabidopsis lyrata petraea F2 progeny grown on cadmium-contaminated soil

(2010) Glenda Willems et al.   NEW PHYTOLOGIST

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

(2010) M. A. Beilstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

When no means no: guide to Brassicaceae self-incompatibility

(2010) Rumen Ivanov et al.   TRENDS IN PLANT SCIENCE

Cabbage family affairs: the evolutionary history of Brassicaceae

(2010) Andreas Franzke et al.   TRENDS IN PLANT SCIENCE

The Five AhMTP1 Zinc Transporters Undergo Different Evolutionary Fates towards Adaptive Evolution to Zinc Tolerance in Arabidopsis halleri

(2010) Zaigham Shahzad et al.   PLoS Genetics

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales

(2009) Michael S. Barker et al.   Genome Biology and Evolution

Ecological genomics of Boechera stricta: identification of a QTL controlling the allocation of methionine- vs branched-chain amino acid-derived glucosinolates and levels of insect herbivory

(2009) M E Schranz et al.   HEREDITY

Molecular Phylogenetics, Temporal Diversification, and Principles of Evolution in the Mustard Family (Brassicaceae)

(2009) T. L. P. Couvreur et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiple losses of self-incompatibility in North-AmericanArabidopsis lyrata?: Phylogeographic context and population genetic consequences

(2009) P. N. HOEBE et al.   MOLECULAR ECOLOGY

A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand

(2009) Simon Joly et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

PEP1 regulates perennial flowering in Arabis alpina

(2009) Renhou Wang et al.   NATURE

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Molecular mechanisms of metal hyperaccumulation in plants

(2009) Nathalie Verbruggen et al.   NEW PHYTOLOGIST

Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids

(2009) M. Ha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent speciation associated with the evolution of selfing in Capsella

(2009) J. P. Foxe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck

(2009) Y.-L. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana

(2009) D. Bikard et al.   SCIENCE

The Dynamic Ups and Downs of Genome Size Evolution in Brassicaceae

(2008) M. A. Lysak et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4

(2008) Marc Hanikenne et al.   NATURE

A developmental framework for dissected leaf formation in the Arabidopsis relative Cardamine hirsuta

(2008) Michalis Barkoulas et al.   NATURE GENETICS

Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana

(2008) Siegbert Melzer et al.   NATURE GENETICS

How to usefully compare homologous plant genes and chromosomes as DNA sequences

(2008) Eric Lyons et al.   PLANT JOURNAL

The shrunken genome of Arabidopsis thaliana

(2008) Ryan K. Oyama et al.   PLANT SYSTEMATICS AND EVOLUTION

Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata

(2008) Jeffrey Ross-Ibarra et al.   PLoS One

A Conserved Molecular Framework for Compound Leaf Development

(2008) Thomas Blein et al.   SCIENCE

Natural Variation in Arabidopsis lyrata Vernalization Requirement Conferred by a FRIGIDA Indel Polymorphism

(2007) H. Kuittinen et al.   MOLECULAR BIOLOGY AND EVOLUTION