Comparing two dependent groups via quantiles

This paper considers two general ways dependent groups might be compared based on quantiles. The first compares the quantiles of the marginal distributions. The second focuses on the lower and upper quantiles of the usual difference scores. Methods for comparing quantiles have been derived that typically assume that sampling is from a continuous distribution. There are exceptions, but generally, when sampling from a discrete distribution where tied values are likely, extant methods can perform poorly, even with a large sample size. One reason is that extant methods for estimating the standard error can perform poorly. Another is that quantile estimators based on a single-order statistic, or a weighted average of two-order statistics, are not necessarily asymptotically normal. Our main result is that when using the Harrell-Davis estimator, good control over the Type I error probability can be achieved in simulations via a standard percentile bootstrap method, even when there are tied values, provided the sample sizes are not too small. In addition, the two methods considered here can have substantially higher power than alternative procedures. Using real data, we illustrate how quantile comparisons can be used to gain a deeper understanding of how groups differ.