Inferring biological tasks using Pareto analysis of high-dimensional data

Archetypal analysis of diverse Pseudomonas aeruginosa transcriptomes reveals adaptation in cystic fibrosis airways

(2013) Juliane Thøgersen et al.   BMC BIOINFORMATICS

The geometry of the Pareto front in biological phenotype space

(2013) Hila Sheftel et al.   Ecology and Evolution

Evolutionary Tradeoffs between Economy and Effectiveness in Biological Homeostasis Systems

(2013) Pablo Szekely et al.   PLoS Computational Biology

Hyperspectral Unmixing Overview: Geometrical, Statistical, and Sparse Regression-Based Approaches

(2012) José M. Bioucas-Dias et al.   IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

From single cells to deep phenotypes in cancer

(2012) Sean C Bendall et al.   NATURE BIOTECHNOLOGY

Evolutionary Trade-Offs, Pareto Optimality, and the Geometry of Phenotype Space

(2012) O. Shoval et al.   SCIENCE

Genomic Analysis at the Single-Cell Level

(2011) Tomer Kalisky et al.   Annual Review of Genetics

Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies

(2011) Brian D. Lehmann et al.   JOURNAL OF CLINICAL INVESTIGATION

Archetypal analysis for machine learning and data mining

(2011) Morten Mørup et al.   NEUROCOMPUTING

Robust unmixing of tumor states in array comparative genomic hybridization data

(2010) David Tolliver et al.   BIOINFORMATICS

Applying unmixing to gene expression data for tumor phylogeny inference

(2010) Russell Schwartz et al.   BMC BIOINFORMATICS

Reactome: a database of reactions, pathways and biological processes

(2010) D. Croft et al.   NUCLEIC ACIDS RESEARCH

A Convex Analysis-Based Minimum-Volume Enclosing Simplex Algorithm for Hyperspectral Unmixing

(2009) Tsung-Han Chan et al.   IEEE TRANSACTIONS ON SIGNAL PROCESSING

Impact of Shifting Patterns of Pacific Ocean Warming on North Atlantic Tropical Cyclones

(2009) Hye-Mi Kim et al.   SCIENCE

What is principal component analysis?

(2008) Markus Ringnér   NATURE BIOTECHNOLOGY