PfSR1 controls alternative splicing and steady-state RNA levels inPlasmodium falciparumthrough preferential recognition of specific RNA motifs

Widespread Use of Non-productive Alternative Splice Sites in Saccharomyces cerevisiae

(2014) Tadashi Kawashima et al.   PLoS Genetics

SR Proteins Collaborate with 7SK and Promoter-Associated Nascent RNA to Release Paused Polymerase

(2013) Xiong Ji et al.   CELL

PfSec13 is an unusual chromatin-associated nucleoporin of Plasmodium falciparum that is essential for parasite proliferation in human erythrocytes

(2013) N. Dahan-Pasternak et al.   JOURNAL OF CELL SCIENCE

Genome-wide Analysis Reveals SR Protein Cooperation and Competition in Regulated Splicing

(2013) Shatakshi Pandit et al.   MOLECULAR CELL

DRIMust: a web server for discovering rank imbalanced motifs using suffix trees

(2013) Limor Leibovich et al.   NUCLEIC ACIDS RESEARCH

Isolated pseudo-RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition

(2013) A. Clery et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Agilent platform DNA microarrays for transcriptome analysis of Plasmodium falciparum and Plasmodium berghei for the malaria research community

(2012) Björn F C Kafsack et al.   MALARIA JOURNAL

SRSF1 regulates the assembly of pre-mRNA processing factors in nuclear speckles

(2012) Vidisha Tripathi et al.   MOLECULAR BIOLOGY OF THE CELL

A novel Plasmodium falciparum SR protein is an alternative splicing factor required for the parasites’ proliferation in human erythrocytes

(2012) Shiri Eshar et al.   NUCLEIC ACIDS RESEARCH

Characterization of Plasmodium falciparum Adenylyl Cyclase-β and Its Role in Erythrocytic Stage Parasites

(2012) Eric Salazar et al.   PLoS One

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum

(2011) María J López-Barragán et al.   BMC GENOMICS

3D nuclear architecture reveals coupled cell cycle dynamics of chromatin and nuclear pores in the malaria parasite Plasmodium falciparum

(2011) Allon Weiner et al.   CELLULAR MICROBIOLOGY

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts

(2011) K. Sorber et al.   NUCLEIC ACIDS RESEARCH

Asparagine repeat function in a Plasmodium falciparum protein assessed via a regulatable fluorescent affinity tag

(2011) V. Muralidharan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigating the Host Binding Signature on the Plasmodium falciparum PfEMP1 Protein Family

(2011) Joel H. Janes et al.   PLoS Pathogens

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

A General Chemical Method to Regulate Protein Stability in the Mammalian Central Nervous System

(2010) Mari Iwamoto et al.   CHEMISTRY & BIOLOGY

PfSRPK1, a Novel Splicing-related Kinase fromPlasmodium falciparum

(2010) Aparna Dixit et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

New insights into the blood-stage transcriptome ofPlasmodium falciparumusing RNA-Seq

(2010) Thomas D. Otto et al.   MOLECULAR MICROBIOLOGY

SR Proteins in Vertical Integration of Gene Expression from Transcription to RNA Processing to Translation

(2009) Xiang-Yang Zhong et al.   MOLECULAR CELL

Chromatin Binding of SRp20 and ASF/SF2 and Dissociation from Mitotic Chromosomes Is Modulated by Histone H3 Serine 10 Phosphorylation

(2009) Rebecca J. Loomis et al.   MOLECULAR CELL

A small-scale systematic analysis of alternative splicing in Plasmodium falciparum

(2009) Hideyuki Iriko et al.   PARASITOLOGY INTERNATIONAL

The SR protein family

(2009) Peter J Shepard et al.   GENOME BIOLOGY

The SR protein family of splicing factors: master regulators of gene expression

(2008) Jennifer C. Long et al.   BIOCHEMICAL JOURNAL

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

(2008) J. R. Sanford et al.   GENOME RESEARCH

A regulatable transgene expression system for cultured Plasmodium falciparum parasites

(2008) Christian Epp et al.   MALARIA JOURNAL

Splicing regulation: From a parts list of regulatory elements to an integrated splicing code

(2008) Z. Wang et al.   RNA