Article
Microbiology
Alvaro S. Villalobos, Jutta Wiese, Erik Borchert, Tanja Rahn, Beate M. Slaby, Leon X. Steiner, Sven Kunzel, Cristina Dorador, Johannes F. Imhoff
Summary: Strain Llam7(T) was isolated from the hypersaline lake Salar de Llamara in the Atacama Desert in Chile. Phenotypic, chemotaxonomic, and genomic traits were studied, with the strain belonging to the family Micromonosporaceae. The strain showed differences in fatty acids, cell wall components, whole-cell sugars, and menaquinones. Phylogenetic analysis positioned strain Llam7(T) as a novel species within the genus Micromonospora, forming a distinct cluster with related strains.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Jiading Liu, Xinyu Zhang, Hao Cao, Liwei Guo, Baisuo Zhao, Xiaoxia Zhang, Yanan Wang, Haisheng Wang
Summary: A new species of Alteribacter, named Alteribacter keqinensis sp. nov., was isolated from a soda lake and identified using a polyphasic taxonomic approach. This bacterium displayed a wide range of growth conditions and possessed characteristic features of the genus Alteribacter.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Lei Gao, Bao-Zhu Fang, Yong-Hong Liu, Yin Huang, Shuang Wang, Hong-Chen Jiang, Wen-Jun Li
Summary: A new strain of Paracoccus, named Paracoccus salsus sp. nov., was isolated from saline lake sediment in Xinjiang Uygur Autonomous Region, China. The taxonomic position of the strain was determined using polyphasic taxonomic analysis and phylogenomic analysis. The strain exhibited distinct phenotypic, physiological and genotypic characteristics.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Elham Kazemi, Vahideh Tarhriz, Mohammad Ali Amoozegar, Mohammad Saeid Hejazi
Summary: A novel slightly halophilic bacterium, Halomonas azerbaijanica, was isolated from Urmia Lake in Iran. It thrives in high salinity, moderate temperatures, and neutral pH conditions, belonging to the genus Halomonas.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Tong-Tong Zhang, Dun Liu, Xiao-Yu Zhang, Jia-Cheng Wang, Zong-Jun Du
Summary: A moderately halophilic bacterium, designated C176(T), was isolated from Yuncheng Salt Lake in China. Phylogenetic analysis showed that strain C176(T) is closely related to Spiribacter salinus LMG 27464(T). The major fatty acids of strain C176(T) are Summed feature 8 and C-16:0, and the predominant ubiquinone is Q-8. Assessment of polyphasic taxonomy confirms strain C176(T) as a novel species of the genus Spiribacter, named Spiribacter salilacus sp. nov.
ARCHIVES OF MICROBIOLOGY
(2023)
Article
Microbiology
Minji Kim, Ki-Eun Lee, In-Tae Cha, Soo-Je Park
Summary: Strain M1(T) is a Gram-stain-negative, facultatively anaerobic bacterium belonging to the genus Draconibacterium, with distinct characteristics compared to other species within the genus.
CURRENT MICROBIOLOGY
(2021)
Article
Microbiology
Pengyu Wu, Haoran Ren, Qiuyan Zhu, Yuxia Mei, Yunxiang Liang, Zhenmin Chen
Summary: A new species of the genus Sinomicrobium, named Sinomicrobium weinanense sp. nov., was isolated from saline-alkali soil in China. This Gram-negative, facultative anaerobic, non-motile, rod-shaped strain grew optimally at 37-40 degrees C, pH 7.0, and in the presence of 0-3% (w/v) NaCl. Phylogenetic and genotypic analyses showed that it exhibited highest sequence identity with Sinomicrobium soli N-1-3-6(T), Sinomicrobium pectinilyticum 5DNS001(T), and Sinomicrobium oceani SCSIO 03483(T).
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Geon-Yeong Cho, Kyung- Sook Whang
Summary: In this study, a novel moderately halophilic bacterium was isolated from a grey solar saltern in Shinan, Republic of Korea. The bacterium, named Aquibacillus saliphilus sp. nov., is rod-shaped and facultative anaerobic. It uses nitrates for anaerobic respiration and does not produce glucose acids. The bacterium belongs to the Aquibacillus genus and shows high similarity to Aquibacillus halophilus B6B(T) in its 16S rRNA gene sequence.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Bang-Bang Yang, Bo-Wen Ma, Jia Zhou, Wen-Wen Ma, Yu Luo, Jian-Hang Qu
Summary: A novel bacterium, designated NAS39(T), was isolated from interfacial sediment in Taihu Lake, PR China. It belongs to the genus Flavobacterium and forms a new cluster within this genus. Its closest relatives are Flavobacterium laiguense LB2P30(T) and Flavobacterium tiangeerense 0563(T). Based on its phenotype, chemotaxonomy, genotype, and phylogenetic characteristics, it is proposed as a new species named Flavobacterium taihuense sp. nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Bo-Yuan Zhang, Ye Yuan, Jia Zhou, Xi- Feng Wang, Hai-Feng Li, Jian-Hang Qu
Summary: A taxonomic identification was performed on strain TH16- 21T, which was isolated from the inter-facial sediment of Taihu Lake, PR China. The strain was classified within the genus of Flavobacterium based on phylogenetic analysis. A novel species, Flavobacterium lacisediminis sp. nov., is proposed.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2023)
Article
Microbiology
Yin Huang, Rashidin Abdugheni, Jinbiao Ma, Rui Wang, Lei Gao, Yonghong Liu, Wenjun Li, Man Cai, Li Li
Summary: A new species of Halomonas, named Halomonas flagellata sp. nov., was isolated from soil in Xinjiang, China. It is a motile bacterium with multiple flagella and shows high similarity to other Halomonas strains.
ARCHIVES OF MICROBIOLOGY
(2023)
Article
Microbiology
Zhenqiang Zuo, Dahe Zhao, Jian Zhou, Jing Han, Hua Xiang
Summary: Strain N1521(T) is a novel extremely halophilic archaeon with resistance to salt stress, exhibiting a wide range of adaptability in terms of temperature, pH, and salinity, and capable of producing red pigments.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
(2021)
Article
Microbiology
Yun Wang, Gang-Qiang Jiang, Hong-Ping Lin, Peng Sun, Hong-Yan Zhang, Dong-Mei Lu, Li-Yun Wang, Chang-Jin Kim, Shu-Kun Tang
Summary: The bacterial strain YIM 93176(T) isolated from a saltern in Korea is a novel species belonging to the genus Lentibacillus, named Lentibacillus saliphilus sp. nov., based on polyphasic taxonomic analysis. Genomic sequencing revealed important characteristics such as genome size, fatty acids composition, and respiratory quinone, supporting its affiliation to the Lentibacillus genus.
ARCHIVES OF MICROBIOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
Rebekka H. Luelf, Maik Hilgarth, Matthias A. Ehrmann
Summary: Three moderately halophilic strains were isolated from a lupine-based moromi fermentation and identified as a novel species of the genus Chromohalobacter. These strains exhibited the ability to grow under various salt concentrations and temperatures, and their genome characteristics differed from other closely related strains within the genus.
SYSTEMATIC AND APPLIED MICROBIOLOGY
(2022)
Article
Microbiology
Bing-Bing Liu, Nimaichand Salam, Manik Prabhu Narsing Rao, Shuang Cheng, Yuan-Guo Xie, Lai-You Wang, Yuan-ru Zhang, Xin-Yuan Yu, Shu-xian Guo, Wen-Jun Li
Summary: Two novel halophilic strains were isolated from a saline sediment sample in Aiding salt-lake, China. These strains, named Haloterrigena gelatinilytica, showed high salt and temperature tolerance.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Binyou Liao, Xi Chen, Xuedong Zhou, Yujie Zhou, Yangyang Shi, Xingchen Ye, Min Liao, Ziyi Zhou, Lei Cheng, Biao Ren
Summary: Genome editing technology has made rapid progress in recent years. The limitations of traditional gene-editing methods have led to the development of the CRISPR/Cas system, which has become the dominant genomic editing technology in academia and the pharmaceutical industry due to its high efficiency, simple design, and wide applications.
ARCHIVES OF MICROBIOLOGY
(2022)
Review
Biotechnology & Applied Microbiology
Mostafa Basiony, Liming Ouyang, Danni Wang, Jiaming Yu, Liming Zhou, Mohan Zhu, Xuyuan Wang, Jie Feng, Jing Dai, Yijie Shen, Chengguo Zhang, Qiang Hua, Xiuliang Yang, Lixin Zhang
Summary: The demand for natural astaxanthin in the global market is increasing rapidly, and producing it through native producers is facing challenges of limited yield and high cost. Using nonnative microbial cell factories is a promising strategy to overcome these limitations.
SYNTHETIC AND SYSTEMS BIOTECHNOLOGY
(2022)
Editorial Material
Biotechnology & Applied Microbiology
Zhenghong Li, Chengyu Zhang, Zhengduo Wang, Hao Yan, Chuan Li, Zhiheng Yang, Zilong Li, Lixin Zhang, Weishan Wang
Summary: With the development of synthetic biology, mathematical information can provide accurate understanding of cell metabolism and growth, and guide precision metabolic engineering. Enzyme kinetic parameters are important for describing enzyme activity and quantitatively understanding biological systems.
SYNTHETIC AND SYSTEMS BIOTECHNOLOGY
(2022)
Review
Microbiology
Yaqi Chi, Ye Wang, Mengzhen Ji, Yanyao Li, Hualing Zhu, Yujia Yan, Di Fu, Ling Zou, Biao Ren
Summary: The oral cavity is a habitat for over 1,000 species of microorganisms, which form biofilms and impact oral ecological balance and the development of oral diseases. Natural products from traditional medicine have shown potential antibiofilm activities and can be safe and cost-effective. Therefore, it is important to study and develop these natural products as antibiofilm agents for the oral cavity.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Microbiology
Li-Xin Kong, Zheng Wang, Yu-Ke Shou, Xue-Dong Zhou, Ya-Wen Zong, Ting Tong, Min Liao, Qi Han, Yan Li, Lei Cheng, Biao Ren
Summary: This study found that MRSA promotes the development of OSCC, and the FnBPA protein is a critical virulence factor. Targeting virulence factors can be a new method to block the interaction between drug-resistant pathogens and tumor development.
JOURNAL OF ORAL MICROBIOLOGY
(2022)
Article
Microbiology
Kaixin Xiong, Hualing Zhu, Yanyao Li, Mengzhen Ji, Yujia Yan, Xuan Chen, Yaqi Chi, Xueqin Yang, Ling Deng, Xuedong Zhou, Ling Zou, Biao Ren
Summary: The cross-kingdom interactions between Candida albicans and Actinomyces viscosus in root caries are important, and the arginine biosynthesis pathway plays a key role in this interaction. The findings of this study contribute to the treatment of root caries.
MICROBIOLOGY SPECTRUM
(2022)
Article
Biotechnology & Applied Microbiology
Yaqi Liu, Zheng Wang, Ziyi Zhou, Qizhao Ma, Jing Li, Jun Huang, Lei Lei, Xuedong Zhou, Lei Cheng, Jing Zou, Biao Ren
Summary: This study demonstrated that Candida albicans CHK1 gene plays a crucial role in the development of dental caries by promoting the growth, biofilm formation, and exopolysaccharides production of Streptococcus mutans. The upregulation of S. mutans vicR and vicK genes by C. albicans CHK1 gene enhances the expression of EPS biosynthesis genes, leading to increased EPS production and biofilm formation. In a rat caries model, coinfection with chk1 Delta/Delta and S. mutans resulted in decreased colonization of S. mutans and less severe caries compared to other combinations.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Xiao Guo, Yan Sun, Zheng Wang, Biao Ren, Hockin H. K. Xu, Xian Peng, Mingyun Li, Suping Wang, Haohao Wang, Yao Wu, Michael D. Weir, Xuedong Zhou, Fang Lan, Lei Cheng
Summary: Persistent apical periodontitis is a critical challenge in root canal therapy. Developing root canal filling materials with continuous antibacterial effects and tight seal is important to prevent treatment failure and persistent apical periodontitis. In this study, we modified the EndoREZ root canal sealer by adding the antibacterial material DMADDM and magnetic nanoparticles (MNPs). The modified sealer showed good mechanical properties, biocompatibility, and enhanced antibacterial effects on multispecies biofilms under a magnetic field. In vivo study demonstrated its inhibitory effect on persistent apical periodontitis with minimal resorption and slight increase in periodontal ligament space.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Review
Microbiology
Qian Du, Biao Ren, Xuedong Zhou, Ling Zhang, Xin Xu
Summary: Candida albicans has symbiotic relationships with oral bacteria, impacting the development and management of oral diseases. The interactions between C. albicans and oral bacteria through attachment, signaling, and metabolic cooperation are crucial for understanding the pathogenesis of oral diseases and identifying potential therapeutic targets.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Microbiology
Qingsong Jiang, Qi Jing, Biao Ren, Lei Cheng, Xuedong Zhou, Wenli Lai, Jinzhi He, Mingyun Li
Summary: This study investigated the effect of Enterococcus faecalis on the biofilm formation, hyphal morphogenesis, and virulence gene expression of Candida albicans. The results showed that exposure to E. faecalis culture supernatant promoted the biofilm formation and hyphal morphogenesis of C. albicans, increased the production of exopolymeric substances, cellular surface hydrophobicity, adhesion force of biofilms, and the expression level of EFG1 virulence gene.
Article
Microbiology
Yangyang Shi, Jingou Liang, Xuedong Zhou, Biao Ren, Haohao Wang, Qi Han, Hao Li, Lei Cheng
Summary: The study found that DMAEM@RA had a pH-responsive antimicrobial effect on Streptococcus mutans and Candida albicans dual-species biofilms, preventing secondary caries and attenuating cariogenic virulence.
Article
Biotechnology & Applied Microbiology
Yu Wei, Zheng Wang, Yaqi Liu, Binyou Liao, Yawen Zong, Yangyang Shi, Min Liao, Jiannan Wang, Xuedong Zhou, Lei Cheng, Biao Ren
Summary: Extracellular vesicles (EVs) secreted by Candida albicans play important roles in promoting its own growth and enhancing its pathogenicity through activating the l-arginine/nitric oxide pathway.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Min Liao, Yangyang Shi, Enni Chen, Yuke Shou, Dongyue Dai, Wenpan Xian, Biao Ren, Shimeng Xiao, Lei Cheng
Summary: This study investigated the effects of bio-aging on titanium implants in the oral microenvironment. Different surface treatments were used, and biofilms were established using different bacteria and saliva from healthy individuals and patients with periodontitis. After 30 days of bio-aging, the surface morphology, chemical composition, and water contact angles were measured. The adhesion of cells and biofilms was also evaluated. The results showed that the polished samples had no significant changes, while the MAO- and SLA-treated samples showed mild corrosion. The HA-coated samples were the most vulnerable, especially when exposed to saliva from patients with periodontitis. These findings highlight the importance of oral hygiene and periodontal health for long-term implant success.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Letter
Chemistry, Multidisciplinary
Lixin Zhang, Xueting Liu, Xinye Wang, Guoliang Zhu, Heng Song, Ronghai Cheng, Nathchar Naowarojna, Catherine E. E. Costello, Pinghua Liu
Summary: In their recent publication, Cen, Wang, Zhou et al. reported the crystal structure of a ternary complex of the non-heme iron endoperoxidase FtmOx1 and concluded that it supports the CarC-like mechanistic model for catalysis. However, they failed to accurately describe the CarC-like and COX-like models and address their differences, and their data is consistent with the COX-like model after careful analysis.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2023)
Article
Chemistry, Multidisciplinary
Ronghai Cheng, Andrew C. Weitz, Jared Paris, Yijie Tang, Jingyu Zhang, Heng Song, Nathchar Naowarojna, Kelin Li, Lu Qiao, Juan Lopez, Mark W. Grinstaff, Lixin Zhang, Yisong Guo, Sean Elliott, Pinghua Liu
Summary: This work reports the dual activities of a non-heme iron enzyme OvoA(Mtht) in Methyloversatilis thermotolerans, acting as a thiol oxygenase and a sulfoxide synthase. The control of the enzyme's dual activities by the substrates and the active site iron's secondary coordination shell residues is demonstrated. This finding provides an excellent system for future mechanistic investigation on the modulation of iron-centers' electronic properties for different reactivities.