Global alterations of the transcriptional landscape during yeast growth and development in the absence of Ume6-dependent chromatin modification

A 5′ UTR-mediated translational efficiency mechanism inhibits theCandida albicansmorphological transition

(2014) Delma S. Childers et al.   MOLECULAR MICROBIOLOGY

The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development

(2014) Aurélie Lardenois et al.   NUCLEIC ACIDS RESEARCH

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

Protein–protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches

(2013) Armand G. Ngounou Wetie et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Genetic Networks Inducing Invasive Growth in Saccharomyces cerevisiae Identified Through Systematic Genome-Wide Overexpression

(2013) C. A. Shively et al.   GENETICS

Acetylation of the Transcriptional Repressor Ume6p Allows Efficient Promoter Release and Timely Induction of the Meiotic Transient Transcription Program in Yeast

(2013) M. J. Law et al.   MOLECULAR AND CELLULAR BIOLOGY

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

Saccharomycesgenome database provides new regulation data

(2013) Maria C. Costanzo et al.   NUCLEIC ACIDS RESEARCH

Identification of Genes Affecting Vacuole Membrane Fragmentation in Saccharomyces cerevisiae

(2013) Lydie Michaillat et al.   PLoS One

Multiple MAPK Cascades Regulate the Transcription of IME1, the Master Transcriptional Activator of Meiosis in Saccharomyces cerevisiae

(2013) Smadar Kahana-Edwin et al.   PLoS One

Acetyl-CoA induces transcription of the key G1 cyclin CLN3 to promote entry into the cell division cycle in Saccharomyces cerevisiae

(2013) L. Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive Transcript Diversity and Novel Upstream Open Reading Frame Regulation in Yeast

(2013) Karl Waern et al.   G3-Genes Genomes Genetics

Genome-wide analysis of longevity in nutrient-deprived Saccharomyces cerevisiae reveals importance of recycling in maintaining cell viability

(2012) Hazel M. Davey et al.   ENVIRONMENTAL MICROBIOLOGY

Expression of UME6 , a Key Regulator of Candida albicans Hyphal Development, Enhances Biofilm Formation via Hgc1- and Sun41-Dependent Mechanisms

(2012) Mohua Banerjee et al.   EUKARYOTIC CELL

Gcn5p-dependent acetylation induces degradation of the meiotic transcriptional repressor Ume6p

(2012) Michael J. Mallory et al.   MOLECULAR BIOLOGY OF THE CELL

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

ArrayExpress update—trends in database growth and links to data analysis tools

(2012) Gabriella Rustici et al.   NUCLEIC ACIDS RESEARCH

A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae

(2012) Intawat Nookaew et al.   NUCLEIC ACIDS RESEARCH

Assessment of Algorithms for Inferring Positional Weight Matrix Motifs of Transcription Factor Binding Sites Using Protein Binding Microarray Data

(2012) Yaron Orenstein et al.   PLoS One

Ume6 transcription factor is part of a signaling cascade that regulates autophagy

(2012) C. R. Bartholomew et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Meiosis-induced alterations in transcript architecture and noncoding RNA expression in S. cerevisiae

(2012) K. S. Kim Guisbert et al.   RNA

ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

(2011) Aaron T. Spivak et al.   NUCLEIC ACIDS RESEARCH

Comprehensive phenotypic analysis of single-gene deletion and overexpression strains of Saccharomyces cerevisiae

(2011) Katsunori Yoshikawa et al.   YEAST

The Biomolecular Interaction Network Database in PSI-MI 2.5

(2011) Ruth Isserlin et al.   Database-The Journal of Biological Databases and Curation

Candida albicans Ume6, a Filament-Specific Transcriptional Regulator, Directs Hyphal Growth via a Pathway Involving Hgc1 Cyclin-Related Protein

(2010) Patricia L. Carlisle et al.   EUKARYOTIC CELL

Differential Filamentation of Candida albicans and Candida dubliniensis Is Governed by Nutrient Regulation ofUME6Expression

(2010) Leanne O'Connor et al.   EUKARYOTIC CELL

Ume6p is required for germination and early colony development of yeast ascospores

(2010) Randy Strich et al.   FEMS YEAST RESEARCH

Mitotic Expression of Spo13 Alters M-Phase Progression and Nucleolar Localization of Cdc14 in Budding Yeast

(2010) E. Varela et al.   GENETICS

Chromatin Remodeling around Nucleosome-Free Regions Leads to Repression of Noncoding RNA Transcription

(2010) A. N. Yadon et al.   MOLECULAR AND CELLULAR BIOLOGY

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6

(2010) A. Lardenois et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle

(2010) A. Lardenois et al.   Database-The Journal of Biological Databases and Curation

Bidirectional promoters generate pervasive transcription in yeast

(2009) Zhenyu Xu et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation

(2008) E. Wingender   BRIEFINGS IN BIOINFORMATICS

UME6is a crucial downstream target of other transcriptional regulators of true hyphal development inCandida albicans

(2008) Ute Zeidler et al.   FEMS YEAST RESEARCH

Global control of cell-cycle transcription by coupled CDK and network oscillators

(2008) David A. Orlando et al.   NATURE

Expression levels of a filament-specific transcriptional regulator are sufficient to determine Candida albicans morphology and virulence

(2008) P. L. Carlisle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE

The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes

(2008) M. E. Hillenmeyer et al.   SCIENCE