simMSG: an experimental design tool for high-throughput genotyping of hybrids

Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing

(2015) Brian K. Hand et al.   Current Zoology

Rapid and Inexpensive Whole-Genome Genotyping-by-Sequencing for Crossover Localization and Fine-Scale Genetic Mapping

(2015) Beth A. Rowan et al.   G3-Genes Genomes Genetics

Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing

(2015) Brian K. Hand et al.   Current Zoology

A Genetic Atlas of Human Admixture History

(2014) G. Hellenthal et al.   SCIENCE

High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species

(2014) Molly Schumer et al.   eLife

PHYLOGENOMICS REVEALS EXTENSIVE RETICULATE EVOLUTION INXIPHOPHORUSFISHES

(2013) Rongfeng Cui et al.   EVOLUTION

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

(2013) Manfred Schartl et al.   NATURE GENETICS

ezRAD: a simplified method for genomic genotyping in non-model organisms

(2013) Robert J. Toonen et al.   PeerJ

AN EVALUATION OF THE HYBRID SPECIATION HYPOTHESIS FORXIPHOPHORUS CLEMENCIAEBASED ON WHOLE GENOME SEQUENCES

(2012) Molly Schumer et al.   EVOLUTION

Population Genetics Models of Local Ancestry

(2012) S. Gravel   GENETICS

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence

(2012) T. T. Hu et al.   GENOME RESEARCH

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Evolution of Multiple Additive Loci Caused Divergence between Drosophila yakuba and D. santomea in Wing Rowing during Male Courtship

(2012) Jessica Cande et al.   PLoS One

GENETIC ARCHITECTURE AND ADAPTIVE SIGNIFICANCE OF THE SELFING SYNDROME INCAPSELLA

(2011) Tanja Slotte et al.   EVOLUTION

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

(2011) P. Andolfatto et al.   GENOME RESEARCH

Next-generation hybridization and introgression

(2011) A D Twyford et al.   HEREDITY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Drosophila melanogaster recombination rate calculator

(2010) Anna-Sophie Fiston-Lavier et al.   GENE

Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations

(2009) A. W. NOLTE et al.   MOLECULAR ECOLOGY

Phylogenetic analysis of the Pacific cutthroat trout (Oncorhynchus clarki ssp.: Salmonidae) based on partial mtDNA ND4 sequences: A closer look at the highly fragmented inland species

(2009) Wade D. Wilson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast and flexible simulation of DNA sequence data

(2008) G. K. Chen et al.   GENOME RESEARCH