Genetic isolation between two recently diverged populations of a symbiotic fungus

The population biology of fungal invasions

(2015) P. Gladieux et al.   MOLECULAR ECOLOGY

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

(2014) Antoine Persoons et al.   Frontiers in Plant Science

Population genomics of a symbiont in the early stages of a pest invasion

(2013) Amanda M. V. Brown et al.   MOLECULAR ECOLOGY

Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes

(2013) Pierre Gladieux et al.   MOLECULAR ECOLOGY

The Helvella lacunosa species complex in western North America: cryptic species, misapplied names and parasites

(2013) Nhu H. Nguyen et al.   MYCOLOGIA

Within-population genetic structure differs between two sympatric sister-species of ectomycorrhizal fungi, Rhizopogon vinicolor and R. vesiculosus

(2013) Susie M. Dunham et al.   MYCOLOGIA

Little to no genetic structure in the ectomycorrhizal basidiomycete Suillus spraguei (Syn. S. pictus) across parts of the northeastern USA

(2013) Yazmín Rivera et al.   MYCORRHIZA

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

A Genome-Wide Association Study Identifies Genomic Regions for Virulence in the Non-Model Organism Heterobasidion annosum s.s

(2013) Kerstin Dalman et al.   PLoS One

Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data

(2013) Erica Bree Rosenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EggLib: processing, analysis and simulation tools for population genetics and genomics

(2012) Stéphane De Mita et al.   BMC GENETICS

Measuring ectomycorrhizal fungal dispersal: macroecological patterns driven by microscopic propagules

(2012) KABIR G. PEAY et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

BamTools: a C++ API and toolkit for analyzing and managing BAM files

(2011) D. W. Barnett et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Nuclear and Genome Dynamics in Multinucleate Ascomycete Fungi

(2011) Marcus Roper et al.   CURRENT BIOLOGY

Genetic structure and local adaptation of European wheat yellow rust populations: the role of temperature-specific adaptation

(2011) Mamadou Mboup et al.   Evolutionary Applications

Population genetics of ectomycorrhizal fungi: from current knowledge to emerging directions

(2011) Greg W. Douhan et al.   Fungal Biology

The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

(2011) E. H. Stukenbrock et al.   GENOME RESEARCH

Population genomics and local adaptation in wild isolates of a model microbial eukaryote

(2011) C. E. Ellison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence of dispersal limitation in soil microorganisms: Isolation reduces species richness on mycorrhizal tree islands

(2010) Kabir G. Peay et al.   ECOLOGY

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

(2010) D. E. Neafsey et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics

(2010) A. S. Amend et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological Genetic Divergence of the Fungal Pathogen Didymella rabiei on Sympatric Wild and Domesticated Cicer spp. (Chickpea)

(2009) O. Frenkel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Isolation by landscape in populations of a prized edible mushroom Tricholoma matsutake

(2009) Anthony Amend et al.   CONSERVATION GENETICS

Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species

(2009) M A F Noor et al.   HEREDITY

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Distribution of parasitic fungal species richness: influence of climate versus host species diversity

(2008) Corinne Vacher et al.   DIVERSITY AND DISTRIBUTIONS

High sexual reproduction and limited contemporary dispersal in the ectomycorrhizal fungusTricholoma scalpturatum: new insights from population genetics and spatial autocorrelation analysis

(2008) FABIAN CARRICONDE et al.   MOLECULAR ECOLOGY

Evidence from population genetics that the ectomycorrhizal basidiomycete Laccaria amethystina is an actual multihost symbiont

(2008) MELANIE ROY et al.   MOLECULAR ECOLOGY