Classifying pairs with trees for supervised biological network inference

On protocols and measures for the validation of supervised methods for the inference of biological networks

(2013) Marie Schrynemackers et al.   Frontiers in Genetics

Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers

(2012) Y. Tabei et al.   BIOINFORMATICS

Flaws in evaluation schemes for pair-input computational predictions

(2012) Yungki Park et al.   NATURE METHODS

A Systematic Prediction of Multiple Drug-Target Interactions from Chemical, Genomic, and Pharmacological Data

(2012) Hua Yu et al.   PLoS One

Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference

(2012) Feixiong Cheng et al.   PLoS Computational Biology

Extracting Sets of Chemical Substructures and Protein Domains Governing Drug-Target Interactions

(2011) Yoshihiro Yamanishi et al.   Journal of Chemical Information and Modeling

Unraveling networks of co-regulated genes on the sole basis of genome sequences

(2011) Sylvain Brohée et al.   NUCLEIC ACIDS RESEARCH

The Impact of Multifunctional Genes on "Guilt by Association" Analysis

(2011) Jesse Gillis et al.   PLoS One

Supervised learning with decision tree-based methods in computational and systems biology

(2009) Pierre Geurts et al.   Molecular BioSystems

SIRENE: supervised inference of regulatory networks

(2008) F. Mordelet et al.   BIOINFORMATICS

The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes

(2008) M. E. Hillenmeyer et al.   SCIENCE