Avoiding pitfalls in L1-regularised inference of gene networks

Functional association networks as priors for gene regulatory network inference

(2014) Matthew E. Studham et al.   BIOINFORMATICS

Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks

(2013) Alex Greenfield et al.   BIOINFORMATICS

Optimal Sparsity Criteria for Network Inference

(2013) Andreas Tjärnberg et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Issues impacting genetic network reverse engineering algorithm validation using small networks

(2012) Nguyen Xuan Vinh et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

Robust dynamical network structure reconstruction

(2011) Ye Yuan et al.   AUTOMATICA

Inferring stable genetic networks from steady-state data

(2011) Michael M. Zavlanos et al.   AUTOMATICA

Network modeling of the transcriptional effects of copy number aberrations in glioblastoma

(2011) R. Jornsten et al.   Molecular Systems Biology

How to infer gene networks from expression profiles, revisited

(2011) C. A. Penfold et al.   Interface Focus

A comprehensive assessment of methods for de-novo reverse-engineering of genome-scale regulatory networks

(2010) Varun Narendra et al.   GENOMICS

Near-ideal model selection by ℓ 1 minimization

(2009) Emmanuel J. Candès et al.   ANNALS OF STATISTICS

Preface

(2009) Gustavo Stolovitzky et al.   Annals of the New York Academy of Sciences

A Yeast Synthetic Network for In Vivo Assessment of Reverse-Engineering and Modeling Approaches

(2009) Irene Cantone et al.   CELL

Interampatteness – a generic property of biochemical networks

(2009) T.E.M. Nordling et al.   IET Systems Biology

A network biology approach to aging in yeast

(2009) D. R. Lorenz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Introduction To Compressive Sampling

(2008) E.J. Candes et al.   IEEE SIGNAL PROCESSING MAGAZINE

Models from experiments: combinatorial drug perturbations of cancer cells

(2008) Sven Nelander et al.   Molecular Systems Biology