Convergent Evolution of Ribonuclease H in LTR Retrotransposons and Retroviruses

Widespread and frequent horizontal transfers of transposable elements in plants

(2014) M. El Baidouri et al.   GENOME RESEARCH

Ty3 reverse transcriptase complexed with an RNA-DNA hybrid shows structural and functional asymmetry

(2014) Elżbieta Nowak et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Plant Expansins in Bacteria and Fungi: Evolution by Horizontal Gene Transfer and Independent Domain Fusion

(2013) Nikolas Nikolaidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide signatures of convergent evolution in echolocating mammals

(2013) Joe Parker et al.   NATURE

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

Complexes of HIV-1 RT, NNRTI and RNA/DNA hybrid reveal a structure compatible with RNA degradation

(2013) Mikalai Lapkouski et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Turning gold into ‘junk’: transposable elements utilize central proteins of cellular networks

(2013) György Abrusán et al.   NUCLEIC ACIDS RESEARCH

Evolution of the R2 Retrotransposon Ribozyme and Its Self-Cleavage Site

(2013) Danna G. Eickbush et al.   PLoS One

Acquisition of an Archaea-like ribonuclease H domain by plant L1 retrotransposons supports modular evolution

(2013) G. Smyshlyaev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Retrotransposon replication in plants

(2013) Alan H Schulman   Current Opinion in Virology

Signatures of Pleiotropy, Economy and Convergent Evolution in a Domain-Resolved Map of Human–Virus Protein–Protein Interaction Networks

(2013) Sara Garamszegi et al.   PLoS Pathogens

A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons

(2012) Veronika Steinbauerová et al.   GENETICA

Proteolytic Processing of the Human Immunodeficiency Virus Envelope Glycoprotein Precursor Decreases Conformational Flexibility

(2012) Hillel Haim et al.   JOURNAL OF VIROLOGY

Hidden evolutionary complexity of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes

(2012) Natalya Yutin et al.   Virology Journal

The origin of genetic diversity in HIV-1

(2012) Redmond P. Smyth et al.   VIRUS RESEARCH

What Does Virus Evolution Tell Us about Virus Origins?

(2011) E. C. Holmes   JOURNAL OF VIROLOGY

Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plants

(2010) Olga Novikova et al.   BMC GENOMICS

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Bifurcation and Enhancement of Autonomous-Nonautonomous Retrotransposon Partnership through LTR Swapping in Soybean

(2010) J. Du et al.   PLANT CELL

Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

(2010) Jianchang Du et al.   PLANT JOURNAL

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Ribonuclease H: the enzymes in eukaryotes

(2009) Susana M. Cerritelli et al.   FEBS Journal

Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes

(2009) Takashi Tadokoro et al.   FEBS Journal

Fine-grained annotation and classification of de novo predicted LTR retrotransposons

(2009) Sascha Steinbiss et al.   NUCLEIC ACIDS RESEARCH

Convergent evolution of metabolic roles in bacterial co-symbionts of insects

(2009) J. P. McCutcheon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

Relationships of Gag-pol Diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis

(2008) Carlos Llorens et al.   BMC EVOLUTIONARY BIOLOGY

Experimental evidence for splicing of intron-containing transcripts of plant LTR retrotransposon Ogre

(2008) Veronika Steinbauerová et al.   MOLECULAR GENETICS AND GENOMICS

Virus evolution: how far does the double β-barrel viral lineage extend?

(2008) Mart Krupovič et al.   NATURE REVIEWS MICROBIOLOGY

PROMALS3D: a tool for multiple protein sequence and structure alignments

(2008) Jimin Pei et al.   NUCLEIC ACIDS RESEARCH

Novel clades of chromodomain-containing Gypsy LTR retrotransposons from mosses (Bryophyta)

(2008) Olga Novikova et al.   PLANT JOURNAL

HIV-1 reverse transcriptase connection subdomain mutations reduce template RNA degradation and enhance AZT excision

(2008) K. A. Delviks-Frankenberry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strand transfer events during HIV-1 reverse transcription

(2008) Vandana Purohit Basu et al.   VIRUS RESEARCH