VHICA, a New Method to Discriminate between Vertical and Horizontal Transposon Transfer: Application to theMarinerFamily withinDrosophila

HTT-DB: Horizontally transferred transposable elements database: Fig. 1.

(2015) Bruno Reis Dotto et al.   BIOINFORMATICS

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Genomic landscape and evolutionary dynamics of mariner transposable elements within the Drosophila genus

(2014) Gabriel Wallau et al.   BMC GENOMICS

A New Genome-Wide Method to Track Horizontally Transferred Sequences: Application to Drosophila

(2014) Laurent Modolo et al.   Genome Biology and Evolution

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

(2014) Z.-X. Chen et al.   GENOME RESEARCH

Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons

(2014) Clément Gilbert et al.   Nature Communications

Horizontal transfer of transposons between and within crustaceans and insects

(2014) Mathilde Dupeyron et al.   Mobile DNA

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The role of vertical and horizontal transfer in the evolution of Paris-like elements in drosophilid species

(2012) Gabriel Luz Wallau et al.   GENETICA

Horizontal Transposon Transfer in Eukarya: Detection, Bias, and Perspectives

(2012) Gabriel Luz Wallau et al.   Genome Biology and Evolution

Reconstructing the Evolutionary History of Transposable Elements

(2012) Arnaud Le Rouzic et al.   Genome Biology and Evolution

New Drosophila P-like elements and reclassification of Drosophila P-elements subfamilies

(2012) Elgion L. S. Loreto et al.   MOLECULAR GENETICS AND GENOMICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Comparative Analysis of Codon Usage Bias and Codon Context Patterns between Dipteran and Hymenopteran Sequenced Genomes

(2012) Susanta K. Behura et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The struggle for life of the genome's selfish architects

(2011) Aurélie Hua-Van et al.   Biology Direct

The evolutionary history of mariner-like elements in Neotropical drosophilids

(2011) Gabriel Luz Wallau et al.   GENETICA

A supertree analysis and literature review of the genus Drosophila and closely related genera (Diptera, Drosophilidae)

(2011) Kim van der Linde et al.   INSECT SYSTEMATICS & EVOLUTION

Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila

(2011) Adriana Granzotto et al.   MOLECULAR GENETICS AND GENOMICS

Increasing the data size to accurately reconstruct the phylogenetic relationships between nine subgroups of the Drosophila melanogaster species group (Drosophilidae, Diptera)

(2011) Yong Yang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

(2011) Vincent Ranwez et al.   PLoS One

A Role for Codon Order in Translation Dynamics

(2010) Gina Cannarozzi et al.   CELL

Population Genomics of Transposable Elements in Drosophila melanogaster

(2010) D. A. Petrov et al.   MOLECULAR BIOLOGY AND EVOLUTION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

(2010) Sarah Schaack et al.   TRENDS IN ECOLOGY & EVOLUTION

Effect of Correlated tRNA Abundances on Translation Errors and Evolution of Codon Usage Bias

(2010) Premal Shah et al.   PLoS Genetics

Codon Usage Biases of Transposable Elements and Host Nuclear Genes in Arabidopsis thaliana and Oryza sativa

(2010) Jia Jia et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes

(2009) Adriana Granzotto et al.   BMC EVOLUTIONARY BIOLOGY

Evolution of Tom, 297, 17.6 and rover retrotransposons in Drosophilidae species

(2009) Newton Medeiros Vidal et al.   MOLECULAR GENETICS AND GENOMICS

Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes

(2009) Carolina Bartolomé et al.   GENOME BIOLOGY

Revisiting horizontal transfer of transposable elements in Drosophila

(2008) E L S Loreto et al.   HEREDITY

Multiple invasions of Errantivirus in the genus Drosophila

(2008) A. Ludwig et al.   INSECT MOLECULAR BIOLOGY