Gene Expression Evolves under a House-of-Cards Model of Stabilizing Selection

Selection on noise constrains variation in a eukaryotic promoter

(2015) Brian P. H. Metzger et al.   NATURE

Tempo and mode of regulatory evolution in Drosophila

(2014) J. D. Coolon et al.   GENOME RESEARCH

The Genotype–Phenotype Map of Yeast Complex Traits: Basic Parameters and the Role of Natural Selection

(2014) Wei-Chin Ho et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mapping Small Effect Mutations in Saccharomyces cerevisiae : Impacts of Experimental Design and Mutational Properties

(2014) Fabien Duveau et al.   G3-Genes Genomes Genetics

Genetic Interactions Involving Five or More Genes Contribute to a Complex Trait in Yeast

(2014) Matthew B. Taylor et al.   PLoS Genetics

Interspecific Divergence of Transcription Networks along Lines of Genetic Variance in Drosophila: Dimensionality, Evolvability, and Constraint

(2013) Paolo Innocenti et al.   MOLECULAR BIOLOGY AND EVOLUTION

Finding the sources of missing heritability in a yeast cross

(2013) Joshua S. Bloom et al.   NATURE

Epistasis and quantitative traits: using model organisms to study gene–gene interactions

(2013) Trudy F. C. Mackay   NATURE REVIEWS GENETICS

The Rate and Effects of Spontaneous Mutation on Fitness Traits in the Social Amoeba, Dictyostelium discoideum

(2013) David W. Hall et al.   G3-Genes Genomes Genetics

The Ability of Flux Balance Analysis to Predict Evolution of Central Metabolism Scales with the Initial Distance to the Optimum

(2013) William R. Harcombe et al.   PLoS Computational Biology

Estimate of the Spontaneous Mutation Rate in Chlamydomonas reinhardtii

(2012) Rob W. Ness et al.   GENETICS

Genomic Background and Generation Time Influence Deleterious Mutation Rates in Daphnia

(2012) L. C. Latta et al.   GENETICS

Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae

(2012) Andrea Hodgins-Davis et al.   Genome Biology and Evolution

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

(2012) D. Marbach et al.   GENOME RESEARCH

Nonlinear Fitness Consequences of Variation in Expression Level of a Eukaryotic Gene

(2012) J. S. Rest et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Selection Index for Gene Expression Evolution and Its Application to the Divergence between Humans and Chimpanzees

(2012) Maria Warnefors et al.   PLoS One

Aging Uncouples Heritability and Expression-QTL in Caenorhabditis elegans

(2012) Ana Viñuela et al.   G3-Genes Genomes Genetics

Genome-Wide Fine-Scale Recombination Rate Variation in Drosophila melanogaster

(2012) Andrew H. Chan et al.   PLoS Genetics

Contrasting Properties of Gene-Specific Regulatory, Coding, and Copy Number Mutations in Saccharomyces cerevisiae: Frequency, Effects, and Dominance

(2012) Jonathan D. Gruber et al.   PLoS Genetics

Phenotypic Selection in Natural Populations: What Limits Directional Selection?

(2011) Joel G. Kingsolver et al.   AMERICAN NATURALIST

Approximate Bayesian Analysis of Drosophila melanogaster Polymorphism Data Reveals a Recent Colonization of Southeast Asia

(2011) Stefan J.Y. Laurent et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mutation Rates and Intraspecific Divergence of the Mitochondrial Genome of Pristionchus pacificus

(2011) Ruxandra I. Molnar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Outcrossing, mitotic recombination, and life-history trade-offs shape genome evolution inSaccharomyces cerevisiae

(2011) Paul M. Magwene et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species

(2010) Peter Andolfatto et al.   Genome Biology and Evolution

Genome-wide gene expression regulation as a function of genotype and age in C. elegans

(2010) A. Vinuela et al.   GENOME RESEARCH

Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast species

(2010) E. Elyashiv et al.   GENOME RESEARCH

Dissection of genetically complex traits with extremely large pools of yeast segregants

(2010) Ian M. Ehrenreich et al.   NATURE

Selection at Linked Sites Shapes Heritable Phenotypic Variation in C. elegans

(2010) M. V. Rockman et al.   SCIENCE

Intrinsic variability of gene expression encoded in nucleosome positioning sequences

(2009) Jung Kyoon Choi et al.   NATURE GENETICS

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

Genetical toxicogenomics in Drosophila identifies master-modulatory loci that are regulated by developmental exposure to lead

(2009) Douglas M. Ruden et al.   NEUROTOXICOLOGY

Optimization of gene expression by natural selection

(2009) T. Bedford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EFFECTS OF SPONTANEOUS MUTATION ACCUMULATION ON SEX RATIO TRAITS IN A PARASITOID WASP

(2008) Bart A. Pannebakker et al.   EVOLUTION

FITNESS EFFECTS OF MUTATION ACCUMULATION IN A NATURAL OUTBRED POPULATION OF WILD RADISH (RAPHANUS RAPHANISTRUM): COMPARISON OF FIELD AND GREENHOUSE ENVIRONMENTS

(2008) Angela J. Roles et al.   EVOLUTION

ESTIMATING NONLINEAR SELECTION GRADIENTS USING QUADRATIC REGRESSION COEFFICIENTS: DOUBLE OR NOTHING?

(2008) John R. Stinchcombe et al.   EVOLUTION

Evolution of Primate Gene Expression: Drift and Corrective Sweeps?

(2008) R. Chaix et al.   GENETICS

Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae

(2008) KYLE M. BROWN et al.   MOLECULAR ECOLOGY

A genome-wide view of the spectrum of spontaneous mutations in yeast

(2008) M. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene–Environment Interaction in Yeast Gene Expression

(2008) Erin N Smith et al.   PLOS BIOLOGY