Simultaneous Quantification of Viral Antigen Expression Kinetics Using Data-Independent (DIA) Mass Spectrometry

Quantitative Temporal Viromics: An Approach to Investigate Host-Pathogen Interaction

(2014) Michael P. Weekes et al.   CELL

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

(2014) Hannes L Röst et al.   NATURE BIOTECHNOLOGY

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

(2014) Nils A Kulak et al.   NATURE METHODS

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

A repository of assays to quantify 10,000 human proteins by SWATH-MS

(2014) George Rosenberger et al.   Scientific Data

Systemic Toll-Like Receptor Ligation and Selective Killing of Dendritic Cell Subsets Fail To Dissect Priming Pathways for Anti-Vaccinia Virus CD8+ T Cells

(2013) Y. C. Wong et al.   JOURNAL OF VIROLOGY

A Novel Naturally Occurring Tandem Promoter in Modified Vaccinia Virus Ankara Drives Very Early Gene Expression and Potent Immune Responses

(2013) Sonia T. Wennier et al.   PLoS One

Cascade regulation of vaccinia virus gene expression is modulated by multistage promoters

(2013) Zhilong Yang et al.   VIROLOGY

Kinetics of Antigen Expression and Epitope Presentation during Virus Infection

(2013) Nathan P. Croft et al.   PLoS Pathogens

A First Step Toward Completion of a Genome-Wide Characterization of the Human Proteome

(2012) Gyorgy Marko-Varga et al.   JOURNAL OF PROTEOME RESEARCH

Label-free quantitative proteomics trends for protein–protein interactions

(2012) Stephen Tate et al.   Journal of Proteomics

Mass Spectrometry: Reconnaissance at the Frontiers of Biology

(2012) Alma L. Burlingame et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass spectrometry–based targeted proteomics

(2012) Allison Doerr   NATURE METHODS

Mass spectrometry based proteomic studies on viruses and hosts – A review

(2011) Jie Zheng et al.   ANALYTICA CHIMICA ACTA

Emerging and neglected tropical diseases: translational application of proteomics

(2011) Britta Denman et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS

(2011) Annette Michalski et al.   JOURNAL OF PROTEOME RESEARCH

An Overview of the Vaccinia Virus Infectome: a Survey of the Proteins of the Poxvirus-Infected Cell

(2011) W. Chou et al.   JOURNAL OF VIROLOGY

Expression Profiling of the Intermediate and Late Stages of Poxvirus Replication

(2011) Z. Yang et al.   JOURNAL OF VIROLOGY

A decade’s perspective on DNA sequencing technology

(2011) Elaine R. Mardis   NATURE

Proteome analysis of vaccinia virus IHD-W-infected HEK 293 cells with 2-dimensional gel electrophoresis and MALDI-PSD-TOF MS of on solid phase support N-terminally sulfonated peptides

(2011) Sebastian Bartel et al.   Virology Journal

A Decade of Systems Biology

(2010) Han-Yu Chuang et al.   Annual Review of Cell and Developmental Biology

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Simultaneous high-resolution analysis of vaccinia virus and host cell transcriptomes by deep RNA sequencing

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of Vaccinia Virus−Host Protein−Protein Interactions: Validations of Yeast Two-Hybrid Screenings

(2009) Leiliang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass Spectrometry

(2009) David L. Tabb et al.   JOURNAL OF PROTEOME RESEARCH

Application of proteomics methods for pathogen discovery

(2009) Yiming Ye et al.   JOURNAL OF VIROLOGICAL METHODS

Poxvirus Proteomics and Virus-Host Protein Interactions

(2009) K. Van Vliet et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Systems Integration of Biodefense Omics Data for Analysis of Pathogen-Host Interactions and Identification of Potential Targets

(2009) Peter B. McGarvey et al.   PLoS One

Selected reaction monitoring for quantitative proteomics: a tutorial

(2008) Vinzenz Lange et al.   Molecular Systems Biology

Comparative Analysis of Viral Gene Expression Programs during Poxvirus Infection: A Transcriptional Map of the Vaccinia and Monkeypox Genomes

(2008) Kathleen H. Rubins et al.   PLoS One

Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes

(2008) E. Assarsson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA