Serum Glycoprotein Biomarker Discovery and Qualification Pipeline Reveals Novel Diagnostic Biomarker Candidates for Esophageal Adenocarcinoma

Identification of Glycoproteins Containing Specific Glycans Using a Lectin-Chemical Method

(2015) Yan Li et al.   ANALYTICAL CHEMISTRY

Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury

(2015) Hasmik Keshishian et al.   MOLECULAR & CELLULAR PROTEOMICS

Discovery and confirmation of a protein biomarker panel with potential to predict response to biological therapy in psoriatic arthritis

(2014) Opeyemi S Ademowo et al.   ANNALS OF THE RHEUMATIC DISEASES

Cancer statistics, 2014

(2014) Rebecca Siegel et al.   CA-A CANCER JOURNAL FOR CLINICIANS

Inflammation and Oxidative Stress Markers and Esophageal Adenocarcinoma Incidence in a Barrett's Esophagus Cohort

(2014) S. Hardikar et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Esophageal-guided biopsy with volumetric laser endomicroscopy and laser cautery marking: a pilot clinical study

(2014) Melissa J. Suter et al.   GASTROINTESTINAL ENDOSCOPY

LC–MS/MS Quantitation of Esophagus Disease Blood Serum Glycoproteins by Enrichment with Hydrazide Chemistry and Lectin Affinity Chromatography

(2014) Ehwang Song et al.   JOURNAL OF PROTEOME RESEARCH

Obesity and Risk of Esophageal Adenocarcinoma and Barrett’s Esophagus: A Mendelian Randomization Study

(2014) Aaron P. Thrift et al.   JNCI-Journal of the National Cancer Institute

MS-Viewer: A Web-based Spectral Viewer for Proteomics Results

(2014) Peter R. Baker et al.   MOLECULAR & CELLULAR PROTEOMICS

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis

(2014) Jamie M J Weaver et al.   NATURE GENETICS

Barrett's Esophagus

(2014) Stuart J. Spechler et al.   NEW ENGLAND JOURNAL OF MEDICINE

The sweet and sour of serological glycoprotein tumor biomarker quantification

(2013) Uros Kuzmanov et al.   BMC Medicine

Early Diagnostic Biomarkers for Esophageal Adenocarcinoma--The Current State of Play

(2013) A. K. Shah et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Reduced expression of αGlcNAc in Barrett's oesophagus adjacent to Barrett's adenocarcinoma - a possible biomarker to predict the malignant potential of Barrett's oesophagus

(2013) Yugo Iwaya et al.   HISTOPATHOLOGY

The GlycoFilter: A Simple and Comprehensive Sample Preparation Platform for Proteomics, N-Glycomics and Glycosylation Site Assignment

(2013) Hui Zhou et al.   MOLECULAR & CELLULAR PROTEOMICS

Plasma Proteome Database as a resource for proteomics research: 2014 update

(2013) Vishalakshi Nanjappa et al.   NUCLEIC ACIDS RESEARCH

Comparative glycomic profiling of isotopically permethylated N-glycans by liquid chromatography/electrospray ionization mass spectrometry

(2013) Yunli Hu et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins

(2012) Andrew J. Percy et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

N-Glycan Profiling by Microchip Electrophoresis to Differentiate Disease States Related to Esophageal Adenocarcinoma

(2012) Indranil Mitra et al.   ANALYTICAL CHEMISTRY

Trends in esophageal adenocarcinoma incidence and mortality

(2012) Chin Hur et al.   CANCER

The Riddle of Protein Diagnostics: Future Bleak or Bright?

(2012) N. L. Anderson et al.   CLINICAL CHEMISTRY

The Long Journey of Cancer Biomarkers from the Bench to the Clinic

(2012) M. P. Pavlou et al.   CLINICAL CHEMISTRY

Barrett’s to Oesophageal Cancer Sequence: A Model of Inflammatory-Driven Upper Gastrointestinal Cancer

(2012) Sarah L. Picardo et al.   DIGESTIVE SURGERY

Using lectins to harvest the plasma/serum glycoproteome

(2012) Susan Fanayan et al.   ELECTROPHORESIS

Population-Based Study Reveals New Risk-Stratification Biomarker Panel for Barrett's Esophagus

(2012) Elizabeth L. Bird–Lieberman et al.   GASTROENTEROLOGY

Hiatal hernia and the risk of Barrett's esophagus

(2012) Juliana Andrici et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Proteomics Pipeline for Biomarker Discovery of Laser Capture Microdissected Breast Cancer Tissue

(2012) Ning Qing Liu et al.   JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA

Molecular imaging using fluorescent lectins permits rapid endoscopic identification of dysplasia in Barrett's esophagus

(2012) Elizabeth L Bird-Lieberman et al.   NATURE MEDICINE

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Using iRT, a normalized retention time for more targeted measurement of peptides

(2012) Claudia Escher et al.   PROTEOMICS

Comparative Genomic Analysis of Esophageal Adenocarcinoma and Squamous Cell Carcinoma

(2012) Nishant Agrawal et al.   Cancer Discovery

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

(2011) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

High-throughput lectin magnetic bead array-coupled tandem mass spectrometry for glycoprotein biomarker discovery

(2011) Eunju Choi et al.   ELECTROPHORESIS

Oesophageal adenocarcinoma: The new epidemic in men?

(2011) Martin Rutegård et al.   MATURITAS

A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease

(2011) Terri A Addona et al.   NATURE BIOTECHNOLOGY

A targeted proteomics–based pipeline for verification of biomarkers in plasma

(2011) Jeffrey R Whiteaker et al.   NATURE BIOTECHNOLOGY

A lectin affinity workflow targeting glycosite-specific, cancer-related carbohydrate structures in trypsin-digested human plasma

(2010) Penelope M. Drake et al.   ANALYTICAL BIOCHEMISTRY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Lectin Magnetic Bead Array for Biomarker Discovery

(2010) Dorothy Loo et al.   JOURNAL OF PROTEOME RESEARCH

Cancer Biomarkers: Can We Turn Recent Failures into Success?

(2010) E. P. Diamandis   JNCI-Journal of the National Cancer Institute

Comparative glycomic profiling in esophageal adenocarcinoma

(2010) Zane T. Hammoud et al.   JOURNAL OF THORACIC AND CARDIOVASCULAR SURGERY

Automated immunoassay system for AFP–L3% using on-chip electrokinetic reaction and separation by affinity electrophoresis

(2009) Chiaki Kagebayashi et al.   ANALYTICAL BIOCHEMISTRY

Lectin UEA-I-Binding Proteins Are Specifically Increased in the Squamous Epithelium of Patients with Barrett’s Esophagus

(2009) Helmut Neumann et al.   DIGESTION

Non-endoscopic screening biomarkers for Barrett's oesophagus: from microarray analysis to the clinic

(2009) P Lao-Sirieix et al.   GUT

Quantitative Serum Glycomics of Esophageal Adenocarcinoma and Other Esophageal Disease Onsets†

(2009) Yehia Mechref et al.   JOURNAL OF PROTEOME RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline

(2008) Amanda G. Paulovich et al.   Proteomics Clinical Applications