The 2012/2013 ABRF Proteomic Research Group Study: Assessing Longitudinal Intralaboratory Variability in Routine Peptide Liquid Chromatography Tandem Mass Spectrometry Analyses

Multicenter experiment for quality control of peptide-centric LC–MS/MS analysis — A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers

(2015) Alex Campos et al.   Journal of Proteomics

QC Metrics from CPTAC Raw LC-MS/MS Data Interpreted through Multivariate Statistics

(2014) Xia Wang et al.   ANALYTICAL CHEMISTRY

Wavelet-Based Peak Detection and a New Charge Inference Procedure for MS/MS Implemented in ProteoWizard’s msConvert

(2014) William R. French et al.   JOURNAL OF PROTEOME RESEARCH

Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS

(2013) Markku Varjosalo et al.   NATURE METHODS

QuaMeter: Multivendor Performance Metrics for LC–MS/MS Proteomics Instrumentation

(2012) Ze-Qiang Ma et al.   ANALYTICAL CHEMISTRY

Quality assessment for clinical proteomics

(2012) David L. Tabb   CLINICAL BIOCHEMISTRY

Quality control in LC-MS/MS

(2011) Thomas Köcher et al.   PROTEOMICS

Platform for Establishing Interlaboratory Reproducibility of Selected Reaction Monitoring-Based Mass Spectrometry Peptide Assays

(2010) A. Prakash et al.   JOURNAL OF PROTEOME RESEARCH

Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance

(2009) Amanda G. Paulovich et al.   MOLECULAR & CELLULAR PROTEOMICS

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses

(2009) Paul A. Rudnick et al.   MOLECULAR & CELLULAR PROTEOMICS

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

(2009) Terri A Addona et al.   NATURE BIOTECHNOLOGY

A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

(2009) Alexander W Bell et al.   NATURE METHODS

The Standard Protein Mix Database: A Diverse Data Set To Assist in the Production of Improved Peptide and Protein Identification Software Tools

(2007) John Klimek et al.   JOURNAL OF PROTEOME RESEARCH