Scoring Function Based on Weighted Residue Network

Prediction of protein-binding areas by small-world residue networks and application to docking

(2011) Carles Pons et al.   BMC BIOINFORMATICS

Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein−Protein Docking

(2011) Carles Pons et al.   Journal of Chemical Information and Modeling

pyDockCG: New Coarse-Grained Potential for Protein–Protein Docking

(2011) Albert Solernou et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation

(2010) Albert Solernou et al.   BMC BIOINFORMATICS

Network analysis of protein-protein interaction

(2010) Shan Chang et al.   CHINESE SCIENCE BULLETIN

Structural basis for the specific interaction of chicken haemoglobin with bromophenol blue: a computational analysis

(2010) Hui Yu et al.   MOLECULAR PHYSICS

Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring

(2010) Xinqi Gong et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding

(2010) Carles Pons et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

FRODOCK: a new approach for fast rotational protein–protein docking

(2009) José Ignacio Garzon et al.   BIOINFORMATICS

Docking and scoring: applications to drug discovery in the interactomics era

(2009) Solène Grosdidier et al.   Expert Opinion on Drug Discovery

Comparison of Several Molecular Docking Programs: Pose Prediction and Virtual Screening Accuracy

(2009) Jason B. Cross et al.   Journal of Chemical Information and Modeling

Are the native states of proteins kinetic traps?

(2009) Leonor Cruzeiro et al.   MOLECULAR PHYSICS

How patchy can one get and still condense? The role of dissimilar patches in the interactions of colloidal particles

(2009) J.M. Tavares et al.   MOLECULAR PHYSICS

Present and future challenges and limitations in protein-protein docking

(2009) Carles Pons et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Amino acid network and its scoring application in protein–protein docking

(2008) Shan Chang et al.   BIOPHYSICAL CHEMISTRY

Crystal structure of opsin in its G-protein-interacting conformation

(2008) Patrick Scheerer et al.   NATURE

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE