Epidemic Spread of Symbiotic and Non-Symbiotic Bradyrhizobium Genotypes Across California

A database for the taxonomic and phylogenetic identification of the genus Bradyrhizobium using multilocus sequence analysis

(2015) Helton Azevedo et al.   BMC GENOMICS

Microbial taxonomy in the post-genomic era: Rebuilding from scratch?

(2014) Cristiane C. Thompson et al.   ARCHIVES OF MICROBIOLOGY

Efficiency of partner choice and sanctions in Lotus is not altered by nitrogen fertilization

(2014) J. U. Regus et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Specialization-generalization trade-off in a Bradyrhizobium symbiosis with wild legume hosts

(2014) Martine Ehinger et al.   BMC ECOLOGY

Sequence-Based Discovery of Bradyrhizobium enterica in Cord Colitis Syndrome

(2013) Ami S. Bhatt et al.   NEW ENGLAND JOURNAL OF MEDICINE

Evolutionary origins and diversification of proteobacterial mutualists

(2013) J. L. Sachs et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Microbiome Assembly across Multiple Body Sites in Low-Birthweight Infants

(2013) E. K. Costello et al.   mBio

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies

(2013) Masayuki Sugawara et al.   GENOME BIOLOGY

Complete Genome Sequence of Bradyrhizobium sp. S23321: Insights into Symbiosis Evolution in Soil Oligotrophs

(2012) Takashi Okubo et al.   MICROBES AND ENVIRONMENTS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Evolutionary Instability of Symbiotic Function in Bradyrhizobium japonicum

(2011) Joel L. Sachs et al.   PLoS One

Origins of cheating and loss of symbiosis in wildBradyrhizobium

(2010) J. L. SACHS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

A complex journey: transmission of microbial symbionts

(2010) Monika Bright et al.   NATURE REVIEWS MICROBIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

PASSaGE: Pattern Analysis, Spatial Statistics and Geographic Exegesis. Version 2

(2010) Michael S. Rosenberg et al.   Methods in Ecology and Evolution

In Situ Phylogenetic Structure and Diversity of Wild Bradyrhizobium Communities

(2009) J. L. Sachs et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Multilocus sequence analysis of the genus Bradyrhizobium

(2009) Raul Rivas et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Multilocus Sequence Analysis for Assessment of the Biogeography and Evolutionary Genetics of Four Bradyrhizobium Species That Nodulate Soybeans on the Asiatic Continent

(2008) P. Vinuesa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571

(2008) Kyung-Bum Lee et al.   BMC GENOMICS