SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets

Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics

(2012) Housheng Hansen He et al.   GENOME RESEARCH

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

(2012) Jordi Barretina et al.   NATURE

Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology

(2011) Jürgen Cox et al.   Annual Review of Biochemistry

Uncover disease genes by maximizing information flow in the phenome-interactome network

(2011) Y. Chen et al.   BIOINFORMATICS

From pharmacogenomic knowledge acquisition to clinical applications: the PharmGKB as a clinical pharmacogenomic biomarker resource

(2011) Ellen M McDonagh et al.   Biomarkers in Medicine

Relating protein adduction to gene expression changes: a systems approach

(2011) Bing Zhang et al.   Molecular BioSystems

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

(2011) Bruno Aranda et al.   NATURE METHODS

Possible involvement of GDI1 protein, a GDP dissociation inhibitor related to vesicle transport, in an amelioration of zinc toxicity in Saccharomyces cerevisiae

(2011) Bunichi Ezaki et al.   YEAST

An information-flow-based model with dissipation, saturation and direction for active pathway inference

(2010) Xianwen Ren et al.   BMC Systems Biology

A systems view of epithelial–mesenchymal transition signaling states

(2010) Stuart Thomson et al.   CLINICAL & EXPERIMENTAL METASTASIS

Combining functional genomics and chemical biology to identify targets of bioactive compounds

(2010) Cheuk Hei Ho et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Endoplasmic reticulum is a major target of cadmium toxicity in yeast

(2010) Aurélie Gardarin et al.   MOLECULAR MICROBIOLOGY

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Finding undetected protein associations in cell signaling by belief propagation

(2010) M. Bailly-Bechet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Validation of a Rat Seminiferous Tubule Culture Model as a Suitable System for Studying Toxicant Impact on Meiosis Effect of Hexavalent Chromium

(2010) Cendrine Geoffroy-Siraudin et al.   TOXICOLOGICAL SCIENCES

Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity

(2009) Esti Yeger-Lotem et al.   NATURE GENETICS

Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks

(2009) S.-s. C. Huang et al.   Science Signaling

Information Flow Analysis of Interactome Networks

(2009) Patrycja Vasilyev Missiuro et al.   PLoS Computational Biology

eQED: an efficient method for interpreting eQTL associations using protein networks

(2008) Silpa Suthram et al.   Molecular Systems Biology

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE

Global Transcriptome and Deletome Profiles of Yeast Exposed to Transition Metals

(2008) Yong Hwan Jin et al.   PLoS Genetics