Phenotypic transition maps of 3D breast acini obtained by imaging-guided agent-based modeling

A computational approach to resolve cell level contributions to early glandular epithelial cancer progression

(2010) Sean HJ Kim et al.   BMC Systems Biology

Characterizing the Dynamics of CD4+ T Cell Priming within a Lymph Node

(2010) J. J. Linderman et al.   JOURNAL OF IMMUNOLOGY

Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling

(2010) Katarzyna A. Rejniak et al.   PLoS Computational Biology

Identifying the Rules of Engagement Enabling Leukocyte Rolling, Activation, and Adhesion

(2010) Jonathan Tang et al.   PLoS Computational Biology

Simulating Microdosimetry in a Virtual Hepatic Lobule

(2010) John Wambaugh et al.   PLoS Computational Biology

Modeling multi-cellular behavior in epidermal tissue homeostasis via finite state machines in multi-agent systems

(2009) T. Sutterlin et al.   BIOINFORMATICS

Cross-scale, cross-pathway evaluation using an agent-based non-small cell lung cancer model

(2009) Zhihui Wang et al.   BIOINFORMATICS

Factors necessary to produce basoapical polarity in human glandular epithelium formed in conventional and high-throughput three-dimensional culture: example of the breast epithelium

(2009) Cedric Plachot et al.   BMC BIOLOGY

Elongation, proliferation & migration differentiate endothelial cell phenotypes and determine capillary sprouting

(2009) Amina A Qutub et al.   BMC Systems Biology

Paradoxical Dependencies of Tumor Dormancy and Progression on Basic Cell Kinetics

(2009) H. Enderling et al.   CANCER RESEARCH

Prediction of traveling front behavior in a lattice-gas cellular automaton model for tumor invasion

(2009) H. Hatzikirou et al.   COMPUTERS & MATHEMATICS WITH APPLICATIONS

A quantitative cellular automaton model of in vitro multicellular spheroid tumour growth

(2009) Monika Joanna Piotrowska et al.   JOURNAL OF THEORETICAL BIOLOGY

A 2D mechanistic model of breast ductal carcinoma in situ (DCIS) morphology and progression

(2009) Kerri-Ann Norton et al.   JOURNAL OF THEORETICAL BIOLOGY

At the Biological Modeling and Simulation Frontier

(2009) C. Anthony Hunt et al.   PHARMACEUTICAL RESEARCH

A Computational Approach to Understand In Vitro Alveolar Morphogenesis

(2009) Sean H. J. Kim et al.   PLoS One

Agent-Based Model of Therapeutic Adipose-Derived Stromal Cell Trafficking during Ischemia Predicts Ability To Roll on P-Selectin

(2009) Alexander M. Bailey et al.   PLoS Computational Biology

Dependence of Invadopodia Function on Collagen Fiber Spacing and Cross-Linking: Computational Modeling and Experimental Evidence

(2008) Heiko Enderling et al.   BIOPHYSICAL JOURNAL

A Computational Study of the Development of Epithelial Acini: II. Necessary Conditions for Structure and Lumen Stability

(2008) Katarzyna A. Rejniak et al.   BULLETIN OF MATHEMATICAL BIOLOGY

A Computational Study of the Development of Epithelial Acini: I. Sufficient Conditions for the Formation of a Hollow Structure

(2008) Katarzyna A. Rejniak et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Discovering Plausible Mechanistic Details of Hepatic Drug Interactions

(2008) T. N. Lam et al.   DRUG METABOLISM AND DISPOSITION

Studying the emergence of invasiveness in tumours using game theory

(2008) D. Basanta et al.   EUROPEAN PHYSICAL JOURNAL B

From single cells to tissue architecture—a bottom-up approach to modelling the spatio-temporal organisation of complex multi-cellular systems

(2008) J. Galle et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Agent Based Modelling Helps in Understanding the Rules by Which Fibroblasts Support Keratinocyte Colony Formation

(2008) Tao Sun et al.   PLoS One

A Patient-Specific in silico Model of Inflammation and Healing Tested in Acute Vocal Fold Injury

(2008) Nicole Y. K. Li et al.   PLoS One

Four-dimensional realistic modeling of pancreatic organogenesis

(2008) Y. Setty et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA