The assessment of inter-individual variation of whole-genome DNA sequence in 32 cows

Identification of genomic regions associated with female fertility in Danish Jersey using whole genome sequence data

(2015) Johanna K. Höglund et al.   BMC GENETICS

Toward better understanding of artifacts in variant calling from high-coverage samples

(2014) Heng Li   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle

(2014) Rasmus Brøndum et al.   BMC GENOMICS

Evaluation of variant identification methods for whole genome sequencing data in dairy cattle

(2014) Christine F Baes et al.   BMC GENOMICS

Sequencing and annotated analysis of full genome of Holstein breed bull

(2014) Sulev Kõks et al.   MAMMALIAN GENOME

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity

(2013) Kyung-Tai Lee et al.   BMC GENOMICS

Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage

(2013) Sandra Jansen et al.   BMC GENOMICS

Sequencing and annotated analysis of the Holstein cow genome

(2013) Sulev Kõks et al.   MAMMALIAN GENOME

Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle

(2012) D. M. Larkin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

(2011) Paul Stothard et al.   BMC GENOMICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery

(2009) Sebastian H Eck et al.   GENOME BIOLOGY