The Disease Ontology: fostering interoperability between biological and clinical human disease-related data

Development and validation of the JAX Cancer Treatment Profile™ for detection of clinically actionable mutations in solid tumors

(2015) Guruprasad Ananda et al.   EXPERIMENTAL AND MOLECULAR PATHOLOGY

BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis

(2015) Quan Wan et al.   Database-The Journal of Biological Databases and Curation

Phevor Combines Multiple Biomedical Ontologies for Accurate Identification of Disease-Causing Alleles in Single Individuals and Small Nuclear Families

(2014) Marc V. Singleton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

(2014) Warren A. Kibbe et al.   NUCLEIC ACIDS RESEARCH

The immune epitope database (IEDB) 3.0

(2014) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders

(2014) Joanna S. Amberger et al.   NUCLEIC ACIDS RESEARCH

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

(2014) G. dos Santos et al.   NUCLEIC ACIDS RESEARCH

A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE)

(2014) Tsung-Jung Wu et al.   Database-The Journal of Biological Databases and Curation

dcGOR: An R Package for Analysing Ontologies and Protein Domain Annotations

(2014) Hai Fang   PLoS Computational Biology

Neurocarta: aggregating and sharing disease-gene relations for the neurosciences

(2013) Elodie Portales-Casamar et al.   BMC GENOMICS

WormBase 2014: new views of curated biology

(2013) Todd W. Harris et al.   NUCLEIC ACIDS RESEARCH

Protein Ontology: a controlled structured network of protein entities

(2013) Darren A. Natale et al.   NUCLEIC ACIDS RESEARCH

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

(2013) Sebastian Köhler et al.   NUCLEIC ACIDS RESEARCH

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics

(2012) R. Hoehndorf et al.   BIOINFORMATICS

dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more

(2012) Hai Fang et al.   NUCLEIC ACIDS RESEARCH

The disease and gene annotations (DGA): an annotation resource for human disease

(2012) Kai Peng et al.   NUCLEIC ACIDS RESEARCH

Gene Ontology Annotations and Resources

(2012)   NUCLEIC ACIDS RESEARCH

Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome

(2012) Marija Milacic et al.   Cancers

The National Center for Biomedical Ontology

(2011) Mark A Musen et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Disease Ontology: a backbone for disease semantic integration

(2011) L. M. Schriml et al.   NUCLEIC ACIDS RESEARCH

The Neural/Immune Gene Ontology: clipping the Gene Ontology for neurological and immunological systems

(2010) Nophar Geifman et al.   BMC BIOINFORMATICS

Automatic, context-specific generation of Gene Ontology slims

(2010) Melissa J Davis et al.   BMC BIOINFORMATICS

Phenotype ontologies for mouse and man: bridging the semantic gap

(2010) P. N. Schofield et al.   Disease Models & Mechanisms

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

(2010) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

WHO International Classification of Diseases (ICD) Revision Process: incorporating rare diseases into the classification scheme: state of art

(2010) Ségolène Aymé et al.   Orphanet Journal of Rare Diseases

Annotating the human genome with Disease Ontology

(2009) John D Osborne et al.   BMC GENOMICS