Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes

Comprehensive Genome-Wide Proteomic Analysis of Human Placental Tissue for the Chromosome-Centric Human Proteome Project

(2013) Hyoung-Joo Lee et al.   JOURNAL OF PROTEOME RESEARCH

High Performance Computational Analysis of Large-scale Proteome Data Sets to Assess Incremental Contribution to Coverage of the Human Genome

(2013) Nadin Neuhauser et al.   JOURNAL OF PROTEOME RESEARCH

Database resources of the National Center for Biotechnology Information

(2013)   NUCLEIC ACIDS RESEARCH

Late-replicating CNVs as a source of new genes

(2013) D. Juan et al.   Biology Open

The State of the Human Proteome in 2012 as Viewed through PeptideAtlas

(2012) Terry Farrah et al.   JOURNAL OF PROTEOME RESEARCH

Comparative Proteomics Reveals a Significant Bias Toward Alternative Protein Isoforms with Conserved Structure and Function

(2012) I. Ezkurdia et al.   MOLECULAR BIOLOGY AND EVOLUTION

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery

(2012) Jun-ichi Takeda et al.   NUCLEIC ACIDS RESEARCH

APPRIS: annotation of principal and alternative splice isoforms

(2012) Jose Manuel Rodriguez et al.   NUCLEIC ACIDS RESEARCH

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

PASSEL: The PeptideAtlas SRMexperiment library

(2012) Terry Farrah et al.   PROTEOMICS

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

(2011) M. Brosch et al.   GENOME RESEARCH

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

A high-resolution map of human evolutionary constraint using 29 mammals

(2011) Kerstin Lindblad-Toh et al.   NATURE

Combining quantitative proteomics data processing workflows for greater sensitivity

(2011) Niklaas Colaert et al.   NATURE METHODS

firestar —advances in the prediction of functionally important residues

(2011) Gonzalo Lopez et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Consequences of the discontinuation of the International Protein Index (IPI) database and its substitution by the UniProtKB “complete proteome” sets

(2011) Johannes Griss et al.   PROTEOMICS

Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication

(2010) J. Roux et al.   GENOME RESEARCH

Proteomics: a pragmatic perspective

(2010) Parag Mallick et al.   NATURE BIOTECHNOLOGY

Towards a knowledge-based Human Protein Atlas

(2010) Mathias Uhlen et al.   NATURE BIOTECHNOLOGY

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: redesigned web site and web services

(2010) P. W. Rose et al.   NUCLEIC ACIDS RESEARCH

Quantifying the mechanisms of domain gain in animal proteins

(2010) Marija Buljan et al.   GENOME BIOLOGY

Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics

(2008) Thomas Koenig et al.   JOURNAL OF PROTEOME RESEARCH