Phylogenomics of the killer whale indicates ecotype divergence in sympatry

Killer Whale Nuclear Genome and mtDNA Reveal Widespread Population Bottleneck during the Last Glacial Maximum

(2014) Andre E. Moura et al.   MOLECULAR BIOLOGY AND EVOLUTION

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

Geographic Patterns of Genetic Differentiation among Killer Whales in the Northern North Pacific

(2013) Kim M. Parsons et al.   JOURNAL OF HEREDITY

Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals

(2013) Jonathan Romiguier et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tracking niche variation over millennial timescales in sympatric killer whale lineages

(2013) A. D. Foote et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Recent Diversification of a Marine Genus (Tursiops spp.) Tracks Habitat Preference and Environmental Change

(2013) Andre E. Moura et al.   SYSTEMATIC BIOLOGY

Cultural traditions and the evolution of reproductive isolation: ecological speciation in killer whales?

(2012) RÜDIGER RIESCH et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Killer whale ecotypes: is there a global model?

(2012) P. J. N. de Bruyn et al.   BIOLOGICAL REVIEWS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genusDelphinus)

(2012) Ana R. Amaral et al.   MOLECULAR ECOLOGY

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Abundance estimates of killer whales at ­subantarctic Marion Island

(2011) RR Reisinger et al.   Aquatic Biology

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Relaxed Clocks and Inferences of Heterogeneous Patterns of Nucleotide Substitution and Divergence Time Estimates across Whales and Dolphins (Mammalia: Cetacea)

(2011) A. Dornburg et al.   MOLECULAR BIOLOGY AND EVOLUTION

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Out of the Pacific and Back Again: Insights into the Matrilineal History of Pacific Killer Whale Ecotypes

(2011) Andrew D. Foote et al.   PLoS One

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

(2010) P. A. Morin et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genetic differentiation among North Atlantic killer whale populations

(2010) ANDREW D. FOOTE et al.   MOLECULAR ECOLOGY

S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories

(2010) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Social cohesion among kin, gene flow without dispersal and the evolution of population genetic structure in the killer whale (Orcinus orca)

(2009) M. PILOT et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations

(2009) ANDREW D. FOOTE et al.   MOLECULAR ECOLOGY

Radiation of Extant Cetaceans Driven by Restructuring of the Oceans

(2009) Mette E. Steeman et al.   SYSTEMATIC BIOLOGY

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

(2008) I. Milne et al.   BIOINFORMATICS

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Eastern temperate North Pacific offshore killer whales (Orcinus orca): Occurrence, movements, and insights into feeding ecology

(2008) Marilyn E. Dahlheim et al.   MARINE MAMMAL SCIENCE

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One