Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mechanisms of imprinting of the Prader-Willi/Angelman region

(2008) Bernhard Horsthemke et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

Global Survey of Genomic Imprinting by Transcriptome Sequencing

(2008) Tomas Babak et al.   CURRENT BIOLOGY

Independent Effects of cis- and trans-regulatory Variation on Gene Expression in Drosophila melanogaster

(2008) P. J. Wittkopp et al.   GENETICS

Allele-specific gene expression patterns in primary leukemic cells reveal regulation of gene expression by CpG site methylation

(2008) L. Milani et al.   GENOME RESEARCH

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain

(2008) Xu Wang et al.   PLoS One

DNA SEQUENCING: A Plan to Capture Human Diversity in 1000 Genomes

(2008) J. Kaiser   SCIENCE

Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression

(2008) David Serre et al.   PLoS Genetics

High-Resolution Mapping of Expression-QTLs Yields Insight into Human Gene Regulation

(2008) Jean-Baptiste Veyrieras et al.   PLoS Genetics