Article
Biochemistry & Molecular Biology
Shusei Mori, Satoyo Oya, Mayumi Takahashi, Kazuya Takashima, Soichi Inagaki, Tetsuji Kakutani
Summary: Based on studies of the plant genome, it has been found that the demethylation of H3K4me2 plays a negative regulatory role in transcriptionally active genes. A previous study identified a key demethylase LDL3, which interacts with RNA polymerase II and RNA transcription elongation factors to demethylate H3K4me2. These findings suggest that H3K4me2 demethylation serves as a chromatin record of transcriptional activity in plants, ensuring robust gene control.
Article
Multidisciplinary Sciences
Cheng Zeng, Jiwei Chen, Emmalee W. Cooke, Arijita Subuddhi, Eliana T. Roodman, Fei Xavier Chen, Kaixiang Cao
Summary: This study reveals the catalytic-independent role of LSD1 in regulating gene expression and cellular differentiation, demonstrating that the loss of LSD1 protein globally de-represses enhancers and impairs cell fate transition. The researchers found that the increase of H3K27ac catalyzed by P300/CBP, rather than the loss of CoREST complex components from chromatin, contributes to the transcription de-repression of LSD1 targets and differentiation defects caused by LSD1 loss.
NATURE COMMUNICATIONS
(2023)
Review
Chemistry, Medicinal
Yihui Song, Huiqing Zhang, Xiaoke Yang, Yuting Shi, Bin Yu
Summary: Lysine-specific demethylase 1 (LSD1/KDM1A) has emerged as a promising epigenetic target for disease treatment. This review provides an update on LSD1 inhibitors, including natural products, synthetic compounds, and cyclic peptides reported in 2021. The design strategies, structure-activity relationships, binding model analysis, and modes of action are discussed. Highlights include the repurposing of FDA-approved drugs as reversible LSD1 inhibitors, the identification of clinical candidates for neuro-developmental disorders, and the enhanced anti-cancer effects of dual inhibitors targeting both LSD1 and HDAC6 or tubulin.
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY
(2022)
Article
Plant Sciences
Laura Poza-Viejo, Miriam Paya-Milans, Patxi San Martin-Uriz, Laura Castro-Labrador, David Lara-Astiaso, Mark D. Wilkinson, Manuel Pineiro, Jose A. Jarillo, Pedro Crevillen
Summary: Epigenetic regulation is crucial for optimal development and maintenance of gene expression profiles. This study uncovers the epigenetic mechanisms involved in flowering time regulation in Brassica rapa, shedding light on the conserved and distinct regulatory mechanisms between model and crop species.
PLANT CELL AND ENVIRONMENT
(2022)
Article
Cell Biology
Baoyu Chen, Yuwen Zhu, Junliang Chen, Yifei Feng, Yong Xu
Summary: This study reveals that differential TCL expression in malignant colorectal cancer cells is associated with histone H3K9 methylation, and the lysine demethylase KDM4B is essential for TCL transcription. KDM4B interacts with the transcription factor ERG1 to activate TCL transcription by facilitating the assembly of pre-initiation complex on the TCL promoter, ultimately influencing migration and invasion of CRC cells. Additionally, upregulation of KDM4B in advanced stage CRC specimens suggests it may serve as a potential therapeutic target for CRC intervention.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2021)
Review
Cell Biology
Delia Cicciarello, Laurent Schaeffer, Isabella Scionti
Summary: Adult skeletal muscle is composed of multinucleated muscle fibers and has the ability to regenerate. The fate of muscle stem cells is determined by intrinsic and extrinsic factors as well as the expression of specific gene subsets. Histone demethylases play a crucial role in the fate choice of muscle stem cells.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2022)
Article
Cell Biology
Ziyu Zhang, Baoyu Chen, Yuwen Zhu, Tianyi Zhang, Yibiao Yuan, Xiaoling Zhang, Yong Xu
Summary: TGF-beta regulates the transcription of the prometastatic small GTPase RHOJ by activating MKL1 and recruiting the H3K9/H3K27 dual demethylase KDM7A. KDM7A can be used to predict prognosis in breast cancer patients and its knockdown attenuates migration, invasion, growth, and metastasis of breast cancer cells. KDM7A is a direct transcriptional target of TGF-beta signaling, and small-molecule inhibitors of KDM7A may provide therapeutic solutions for malignant breast cancers.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2021)
Review
Oncology
Jayden Sterling, Sharleen V. Menezes, Ramzi H. Abbassi, Lenka Munoz
Summary: Histone lysine demethylases (KDMs) are enzymes that remove methylation marks on lysines in nucleosomes' histone tails, regulating gene transcription and playing important roles in cancer development. KDMs can have activating or repressing effects on gene transcription, regulating the expression of oncogenes and tumor suppressors.
INTERNATIONAL JOURNAL OF CANCER
(2021)
Review
Oncology
Chunyan Hua, Jiaqing Chen, Shuting Li, Jianan Zhou, Jiahong Fu, Weijian Sun, Wenqian Wang
Summary: The review discusses the application of KDM6 demethylases in cancer therapy, covering their structural features, regulatory mechanisms, and functions. KDM6 plays complex roles in human cancers, acting as either a tumor suppressor or an oncoprotein. Potential therapy approaches based on the characteristics and mechanisms of KDM6 enzymes are proposed.
FRONTIERS IN ONCOLOGY
(2021)
Article
Plant Sciences
Takashi Maruoka, Eng-Seng Gan, Nana Otsuka, Makoto Shirakawa, Toshiro Ito
Summary: In Arabidopsis thaliana, histone demethylases JMJ30 and JMJ32 play a role in braking vernalization by activating FLC gene, leading to a faster silencing of FLC and accelerating flowering under moderate vernalized conditions.
FRONTIERS IN PLANT SCIENCE
(2022)
Review
Genetics & Heredity
Sophie A. Nothof, Frederique Magdinier, Julien Van-Gils
Summary: In this review, we discuss the relationship between chromatin structure and post-translational histone modifications with neuronal differentiation, as well as the techniques for genome-wide analysis of histone modifications and the pathologies associated with the dysregulation of the epigenetic machinery.
Article
Microbiology
H. Martin Kramer, Michael F. Seidl, Bart P. H. J. Thomma, David E. Cook
Summary: Analyzing the H3K27me3 and transcription data of the plant-pathogenic fungus Verticillium dahliae grown in three in vitro cultivation media, it was found that many H3K27me3 domains displayed stable profiles across different conditions, while some differentially transcribed genes were associated with local quantitative differences in H3K27me3 ChIP-seq signals. This suggests that while H3K27me3 may play a role in transcriptional variation, it is not a universal regulator of differential transcription in response to environmental cues.
Article
Anatomy & Morphology
Davide Martini, Matteo Digregorio, Ilaria Anna Pia Voto, Giuseppe Morabito, Andrea Degl'Innocenti, Guido Giudetti, Martina Giannaccini, Massimiliano Andreazzoli
Summary: KDM7A is an important histone lysine demethylase that plays a critical role in embryonic development and pathological conditions. This study found that KDM7A is dynamically expressed throughout embryonic development and its overexpression affects the distribution of neuronal subtypes in retinal development.
DEVELOPMENTAL DYNAMICS
(2023)
Article
Cell Biology
Yoshitaka Kubota, Hidekazu Nagano, Kentaro Kosaka, Hideyuki Ogata, Akitoshi Nakayama, Masataka Yokoyama, Kazutaka Murata, Shinsuke Akita, Motone Kuriyama, Nobutaka Furuyama, Masayuki Kuroda, Tomoaki Tanaka, Nobuyuki Mitsukawa
Summary: Ceiling culture-derived preadipocytes (ccdPAs) and adipose-derived stem cells (ASCs) were isolated from human subcutaneous fat tissue and showed differences in adipogenic potential due to variations in methylation and histone modification levels of adipogenesis-related genes, such as PPARc, fatty acid-binding protein 4, and leptin. Genomewide epigenetic analysis revealed distinct patterns in CpG methylation and H3K4me3 modification between ccdPAs and ASCs, suggesting epigenetic mechanisms underlying adipogenic differentiation capabilities of these cell types.
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
(2021)
Review
Plant Sciences
Diego Ornelas-Ayala, Carlos Cortes-Quinones, Jose Olvera-Herrera, Berenice Garcia-Ponce, Adriana Garay-Arroyo, Elena R. Alvarez-Buylla, Maria de la Paz Sanchez
Summary: The Trithorax Group (TrxG) is a conserved complex that regulates transcriptional activation in plants. Recent research has identified new TrxG components and interactions, highlighting their importance in specific tissues.
Article
Cell Biology
Sylvia Weilner, Elisabeth Schraml, Matthias Wieser, Paul Messner, Karl Schneider, Klemens Wassermann, Lucia Micutkova, Klaus Fortschegger, Andrea B. Maier, Rudi Westendorp, Heinrich Resch, Susanne Wolbank, Heinz Redl, Pidder Jansen-Durr, Peter Pietschmann, Regina Grillari-Voglauer, Johannes Grillari
Article
Cell & Tissue Engineering
Anna-Maria Husa, Maria Regina Strobl, Agata Strajeriu, Matthias Wieser, Sabine Strehl, Klaus Fortschegger
STEM CELLS AND DEVELOPMENT
(2018)
Article
Cell Biology
Matthias Hackl, Stefan Brunner, Klaus Fortschegger, Carina Schreiner, Lucia Micutkova, Christoph Mueck, Gerhard T. Laschober, Guenter Lepperdinger, Natalie Sampson, Peter Berger, Dietmar Herndler-Brandstetter, Matthias Wieser, Harald Kuehnel, Alois Strasser, Mark Rinnerthaler, Michael Breitenbach, Michael Mildner, Leopold Eckhart, Erwin Tschachler, Andrea Trost, Johann W. Bauer, Christine Papak, Zlatko Trajanoski, Marcel Scheideler, Regina Grillari-Voglauer, Beatrix Grubeck-Loebenstein, Pidder Jansen-Duerr, Johannes Grillari
Article
Cell Biology
Hanna Dellago, Barbara Preschitz-Kammerhofer, Lucia Terlecki-Zaniewicz, Carina Schreiner, Klaus Fortschegger, Martina W. -F. Chang, Matthias Hackl, Rossella Monteforte, Harald Kuehnel, Markus Schosserer, Florian Gruber, Erwin Tschachler, Marcel Scheideler, Regina Grillari-Voglauer, Johannes Grillari, Matthias Wieser
Article
Biochemistry & Molecular Biology
Hanna Dellago, Marlies Loescher, Paul Ajuh, Ursula Ryder, Christian Kaisermayer, Regina Grillari-Voglauer, Klaus Fortschegger, Stefan Gross, Anna Gstraunthaler, Nicole Borth, Frank Eisenhaber, Angus I. Lamond, Johannes Grillari
BIOCHEMICAL JOURNAL
(2011)
Article
Hematology
Dagmar Schinner, Klaus Fortschegger, Maximilian Kauer, Joao R. M. Marchante, Reinhard Kofler, Monique L. Den Boer, Sabine Strehl
Article
Biochemistry & Molecular Biology
Johannes Grillari, Marlies Loescher, Marco Denegri, Kiseok Lee, Klaus Fortschegger, Frank Eisenhaber, Paul Ajuh, Angus I. Lamond, Hermann Katinger, Regina Grillari-Voglauer
JOURNAL OF BIOLOGICAL CHEMISTRY
(2009)
Article
Biochemistry & Molecular Biology
Klaus Fortschegger, Petra de Graaf, Nikolay S. Outchkourov, Frederik M. A. van Schaik, H. T. Marc Timmers, Ramin Shiekhattar
MOLECULAR AND CELLULAR BIOLOGY
(2010)
Article
Oncology
Klaus Fortschegger, Stefanie Anderl, Dagmar Denk, Sabine Strehl
MOLECULAR CANCER RESEARCH
(2014)
Article
Cell & Tissue Engineering
Elisabeth Schraml, Regina Voglauer, Klaus Fortschegger, Maria Sibilia, Ingeborg Stelzer, Johannes Grillari, Konrad Schauenstein
STEM CELLS AND DEVELOPMENT
(2008)
Article
Biochemistry & Molecular Biology
Klaus Fortschegger, Anna-Maria Husa, Dagmar Schinnerl, Karin Nebral, Sabine Strehl
Summary: A novel study investigated the impact of a JAK2 fusion protein on hematopoietic development using human induced pluripotent stem cells (hiPSCs). The fusion protein was found to activate JAK-STAT signaling and upregulate MYC targets, affecting cell differentiation processes.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Letter
Hematology
Dagmar Schinnerl, Ester Mejstrikova, Angela Schumich, Marketa Zaliova, Klaus Fortschegger, Karin Nebral, Andishe Attarbaschi, Karel Fiser, Maximilian O. Kauer, Niko Popitsch, Sabrina Haslinger, Andrea Inthal, Barbara Buldini, Giuseppe Basso, Jean-Pierre Bourquin, Giuseppe Gaipa, Monika Brueggemann, Tamar Feuerstein, Margarita Maurer-Granofszky, Renate Panzer-Gruemayer, Jan Trka, Georg Mann, Oskar A. Haas, Ondrej Hrusak, Michael N. Dworzak, Sabine Strehl
Article
Biochemistry & Molecular Biology
Klaus Fortschegger, Bettina Wagner, Regina Voglauer, Hermann Katinger, Maria Sibilia, Johannes Grillari
MOLECULAR AND CELLULAR BIOLOGY
(2007)
Article
Geriatrics & Gerontology
B. Hampel, K. Fortschegger, S. Ressler, M. W. Chang, H. Unterluggauer, A. Breitwieser, W. Sommergruber, B. Fitzky, G. Lepperdinger, P. Jansen-Duerr, R. Voglauer, J. Grillari
EXPERIMENTAL GERONTOLOGY
(2006)