标题
Advances in Quantitative FRET-Based Methods for Studying Nucleic Acids
作者
关键词
-
出版物
CHEMBIOCHEM
Volume 13, Issue 14, Pages 1990-2001
出版商
Wiley
发表日期
2012-08-31
DOI
10.1002/cbic.201200400
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The Structure of Sulfoindocarbocyanine 3 Terminally Attached to dsDNA via a Long, Flexible Tether
- (2012) Linas Urnavicius et al. BIOPHYSICAL JOURNAL
- Disentangling Subpopulations in Single-Molecule FRET and ALEX Experiments with Photon Distribution Analysis
- (2012) Toma E. Tomov et al. BIOPHYSICAL JOURNAL
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- (2012) Elana M. S. Stennett et al. CHEMPHYSCHEM
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- (2012) Volodymyr Kudryavtsev et al. CHEMPHYSCHEM
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- (2012) Evelyne Deplazes et al. JOURNAL OF BIOMEDICAL OPTICS
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- (2012) Matthew S. DeVore et al. JOURNAL OF PHYSICAL CHEMISTRY B
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- (2012) Elton Graugnard et al. NANO LETTERS
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- (2012) Lena Linck et al. PHOTOCHEMISTRY AND PHOTOBIOLOGY
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- (2012) David Kelly et al. PLoS One
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- (2011) Annette Kupstat et al. BIOCONJUGATE CHEMISTRY
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- (2011) Justin Spiriti et al. BIOPHYSICAL JOURNAL
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- (2011) Xun Li et al. CHEMICAL PHYSICS LETTERS
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- (2011) Daniel Badali et al. JOURNAL OF CHEMICAL PHYSICS
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- (2010) Stephan Uphoff et al. NATURE METHODS
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- (2010) Martin Kabeláč et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
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- (2010) Søren Preus et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
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- (2010) Sanghwa Lee et al. PLoS One
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- (2010) R. Lamichhane et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cyanine dyes in biophysical research: the photophysics of polymethine fluorescent dyes in biomolecular environments
- (2010) Marcia Levitus et al. QUARTERLY REVIEWS OF BIOPHYSICS
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- (2010) L. Marcus Wilhelmsson QUARTERLY REVIEWS OF BIOPHYSICS
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- (2009) Vassili Ivanov et al. BIOPHYSICAL JOURNAL
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- (2009) Alexander J. Mastroianni et al. BIOPHYSICAL JOURNAL
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- (2009) Aurora Muñoz-Losa et al. BIOPHYSICAL JOURNAL
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- (2009) Jonathan E. Bronson et al. BIOPHYSICAL JOURNAL
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- (2009) Elena Dolghih et al. JOURNAL OF PHYSICAL CHEMISTRY A
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- (2009) Suman Ranjit et al. JOURNAL OF PHYSICAL CHEMISTRY B
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- (2009) Irina V. Gopich et al. JOURNAL OF PHYSICAL CHEMISTRY B
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- (2009) Karl Börjesson et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
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- (2009) Graham T. Dempsey et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex
- (2009) Joanna Andrecka et al. NUCLEIC ACIDS RESEARCH
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- (2009) Billie Jo Harvey et al. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES
- Single-molecule photophysics of oxazines on DNA and its application in a FRET switch
- (2009) Jan Vogelsang et al. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES
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- (2009) Roberto F. Delgadillo et al. PHOTOCHEMISTRY AND PHOTOBIOLOGY
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- (2009) A. Gansen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2009) Joachim Frank QUARTERLY REVIEWS OF BIOPHYSICS
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- Structural Principles From Large RNAs
- (2008) Stephen R. Holbrook Annual Review of Biophysics
- The Structure of Cyanine 5 Terminally Attached to Double-Stranded DNA: Implications for FRET Studies†
- (2008) Asif Iqbal et al. BIOCHEMISTRY
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- (2008) Adrian Fegan et al. CHEMICAL COMMUNICATIONS
- Size- and Distance-Dependent Nanoparticle Surface-Energy Transfer (NSET) Method for Selective Sensing of Hepatitis C Virus RNA
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- (2008) Stanislav Kalinin et al. JOURNAL OF PHYSICAL CHEMISTRY B
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- (2008) Jonas K. Hannestad et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
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