Structural Heterogeneity and Quantitative FRET Efficiency Distributions of Polyprolines through a Hybrid Atomistic Simulation and Monte Carlo Approach

Accurate Distance Determination of Nucleic Acids via Förster Resonance Energy Transfer: Implications of Dye Linker Length and Rigidity

(2011) Simon Sindbert et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Quantifying heterogeneity and conformational dynamics from single molecule FRET of diffusing molecules: recurrence analysis of single particles (RASP)

(2011) Armin Hoffmann et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Separating Static and Dynamic Heterogeneity in Single-Molecule FRET Experiments with Burst Variance Analysis (BVA)

(2010) Joseph P. Torella et al.   BIOPHYSICAL JOURNAL

The Effect of Dye-Dye Interactions on the Spatial Resolution of Single-Molecule FRET Measurements in Nucleic Acids

(2010) Nicolas Di Fiori et al.   BIOPHYSICAL JOURNAL

Characterizing Single-Molecule FRET Dynamics with Probability Distribution Analysis

(2010) Yusdi Santoso et al.   CHEMPHYSCHEM

On the Origin of Broadening of Single-Molecule FRET Efficiency Distributions beyond Shot Noise Limits

(2010) Stanislav Kalinin et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Free Energy Surfaces from Single-Distance Information

(2010) Philipp Schuetz et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Three-dimensional molecular modeling with single molecule FRET

(2010) Axel T. Brunger et al.   JOURNAL OF STRUCTURAL BIOLOGY

Monitoring multiple distances within a single molecule using switchable FRET

(2010) Stephan Uphoff et al.   NATURE METHODS

Single-molecule spectroscopy of protein folding in a chaperonin cage

(2010) H. Hofmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Theoretical Studies of Short Polyproline Systems: Recalibration of a Molecular Ruler†

(2009) Elena Dolghih et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Photophysics of Backbone Fluorescent DNA Modifications: Reducing Uncertainties in FRET

(2009) Suman Ranjit et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Conformational Heterogeneity of a Leucine Enkephalin Analogue in Aqueous Solution and Sodium Dodecyl Sulfate Micelles: Comparison of Time-Resolved FRET and Molecular Dynamics Simulations

(2009) Jay R. Unruh et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Decoding the Pattern of Photon Colors in Single-Molecule FRET

(2009) Irina V. Gopich et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Conformations and free energy landscapes of polyproline peptides

(2009) M. Moradi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing Protein-Chaperone Interactions with Single-Molecule Fluorescence Spectroscopy

(2008) Frank Hillger et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Simulation of Structure, Orientation, and Energy Transfer between AlexaFluor Molecules Attached to MscL

(2008) Ben Corry et al.   BIOPHYSICAL JOURNAL

Ultrafast resonance energy transfer from a site-specifically attached fluorescent chromophore reveals the folding of the N-terminal domain of CP29

(2008) Bart van Oort et al.   CHEMICAL PHYSICS

Protein folding studied by single-molecule FRET

(2008) Benjamin Schuler et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Hydrophobicity effect on interactions between organic molecules in nanocages of surfactant micelle

(2008) S. L. Yefimova et al.   Journal of Applied Spectroscopy

The Proton-translocatingaSubunit of F0F1-ATP Synthase Is Allocated Asymmetrically to the Peripheral Stalk

(2008) Monika G. Düser et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Characterizing Multiple Molecular States in Single-Molecule Multiparameter Fluorescence Detection by Probability Distribution Analysis

(2008) Stanislav Kalinin et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Pitfalls and limitations in the practical use of Förster's theory of resonance energy transfer

(2008) Silvia E. Braslavsky et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Single-molecule FRET measures bends and kinks in DNA

(2008) A. K. Wozniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA