Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

Cell design in bacteria as a convex optimization problem

(2011) Anne Goelzer et al.   AUTOMATICA

Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?

(2010) Maureen Kiley Thomason et al.   Annual Review of Genetics

RNA Polymerase Trafficking in Bacillus subtilis Cells

(2010) S. Ishikawa et al.   JOURNAL OF BACTERIOLOGY

A cis-Encoded Antisense Small RNA Regulated by the HP0165-HP0166 Two-Component System Controls Expression of ureB in Helicobacter pylori

(2010) Y. Wen et al.   JOURNAL OF BACTERIOLOGY

Small subunits of RNA polymerase: localization, levels and implications for core enzyme composition

(2010) G. P. Doherty et al.   MICROBIOLOGY-SGM

The Bacillus subtilis σM regulon and its contribution to cell envelope stress responses

(2010) Warawan Eiamphungporn et al.   MOLECULAR MICROBIOLOGY

A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon

(2010) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

An antisense RNA that governs the expression kinetics of a multifunctional virulence gene

(2010) Eun-Jin Lee et al.   MOLECULAR MICROBIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

An allosteric mechanism of Rho-dependent transcription termination

(2010) Vitaly Epshtein et al.   NATURE

Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi

(2010) Suresh V. Chinni et al.   NUCLEIC ACIDS RESEARCH

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

A NusE:NusG Complex Links Transcription and Translation

(2010) B. M. Burmann et al.   SCIENCE

Cooperation Between Translating Ribosomes and RNA Polymerase in Transcription Elongation

(2010) S. Proshkin et al.   SCIENCE

Transcriptional landscape estimation from tiling array data using a model of signal shift and drift

(2009) Pierre Nicolas et al.   BIOINFORMATICS

Expression of thepgsBEncoding the Poly-gamma-DL-glutamate Synthetase ofBacillus subtilis (natto)

(2009) Keitarou KIMURA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

A single-base resolution map of an archaeal transcriptome

(2009) O. Wurtzel et al.   GENOME RESEARCH

Extracytoplasmic Function   Factors with Overlapping Promoter Specificity Regulate Sublancin Production in Bacillus subtilis

(2009) Y. Luo et al.   JOURNAL OF BACTERIOLOGY

Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis

(2009) C. R. Lammers et al.   MICROBIOLOGY-SGM

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

(2009) V. Barbe et al.   MICROBIOLOGY-SGM

Regulator Trafficking on Bacterial Transcription Units In Vivo

(2009) Rachel A. Mooney et al.   MOLECULAR CELL

The transcriptionally active regions in the genome ofBacillus subtilis

(2009) Simon Rasmussen et al.   MOLECULAR MICROBIOLOGY

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

The transcription unit architecture of the Escherichia coli genome

(2009) Byung-Kwan Cho et al.   NATURE BIOTECHNOLOGY

Transcriptome Complexity in a Genome-Reduced Bacterium

(2009) M. Guell et al.   SCIENCE

Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis

(2008) Anne Goelzer et al.   BMC Systems Biology

Stochastic switching to competence

(2008) Madeleine Leisner et al.   CURRENT OPINION IN MICROBIOLOGY

Chromosomally encoded small antisense RNA inCorynebacterium glutamicum

(2008) Martina Zemanová et al.   FEMS MICROBIOLOGY LETTERS

Novel small RNA-encoding genes in the intergenic regions of Bacillus subtilis

(2008) Shinichi Saito et al.   GENE

The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation inBacillus subtilis

(2008) Libor Krásný et al.   MOLECULAR MICROBIOLOGY

Staphylococcus aureushaem oxygenases are differentially regulated by iron and haem

(2008) Michelle L. Reniere et al.   MOLECULAR MICROBIOLOGY

A novel regulatory protein governing biofilm formation in Bacillus subtilis

(2008) Frances Chu et al.   MOLECULAR MICROBIOLOGY

Advances in bacterial promoter recognition and its control by factors that do not bind DNA

(2008) Shanil P. Haugen et al.   NATURE REVIEWS MICROBIOLOGY

A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets

(2008) Hairong Wei et al.   NUCLEIC ACIDS RESEARCH

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis

(2008) A. V. Banse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins

(2008) A. Gaballa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Termination Factor Rho and Its Cofactors NusA and NusG Silence Foreign DNA in E. coli

(2008) C. J. Cardinale et al.   SCIENCE