Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model

An updated meta-analysis of XRCC4 polymorphisms and cancer risk based on 31 case-control studies

(2017) Ning Shao et al.   Cancer Biomarkers

The bone–fat interface: basic and clinical implications of marrow adiposity

(2015) Maureen J Devlin et al.   Lancet Diabetes & Endocrinology

Transcriptome Analysis of Psoriasis in a Large Case–Control Sample: RNA-Seq Provides Insights into Disease Mechanisms

(2014) Bingshan Li et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Genomics to systems biology in animal and veterinary sciences: Progress, lessons and opportunities

(2014) Haja N. Kadarmideen   Livestock Science

Defects in TLR3 expression and RNase L activation lead to decreased MnSOD expression and insulin resistance in muscle cells of obese people

(2014) O Fabre et al.   Cell Death & Disease

Correlating transcriptional networks to breast cancer survival: a large-scale coexpression analysis

(2013) Colin Clarke et al.   CARCINOGENESIS

The immune cells in adipose tissue

(2013) A. W. Ferrante   DIABETES OBESITY & METABOLISM

Transcriptome analysis of Inbred Long Sleep and Inbred Short Sleep mice

(2013) T. M. Darlington et al.   GENES BRAIN AND BEHAVIOR

Interferon-Inducible Protein IFI35 Negatively Regulates RIG-I Antiviral Signaling and Supports Vesicular Stomatitis Virus Replication

(2013) A. Das et al.   JOURNAL OF VIROLOGY

Utilizing RNA-Seq data for de novo coexpression network inference

(2012) Ovidiu D. Iancu et al.   BIOINFORMATICS

In Osteoporosis, differentiation of mesenchymal stem cells (MSCs) improves bone marrow adipogenesis

(2012) Ana María Pino et al.   BIOLOGICAL RESEARCH

Adipose Co-expression networks across Finns and Mexicans identify novel triglyceride-associated genes

(2012) Blake E Haas et al.   BMC Medical Genomics

Secreted Frizzled-Related Protein 4 Reduces Insulin Secretion and Is Overexpressed in Type 2 Diabetes

(2012) Taman Mahdi et al.   Cell Metabolism

Parallel Selection Mapping Using Artificially Selected Mice Reveals Body Weight Control Loci

(2012) Yingguang Frank Chan et al.   CURRENT BIOLOGY

BDKRB2+9/−9 Polymorphism Is Associated with Higher Risk for Diabetes Mellitus in the Brazilian General Population

(2012) Rafael de Oliveira Alvim et al.   Experimental Diabetes Research

ADAMTS-12 Metalloprotease Is Necessary for Normal Inflammatory Response

(2012) Angela Moncada-Pazos et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Innate immune activation in obesity

(2012) Carey N. Lumeng   MOLECULAR ASPECTS OF MEDICINE

Haplotype combinations of AdPLA gene polymorphisms associate with growth traits in Chinese cattle

(2012) Jiajie Sun et al.   MOLECULAR BIOLOGY REPORTS

The cellular and signaling networks linking the immune system and metabolism in disease

(2012) Olivia Osborn et al.   NATURE MEDICINE

Genetic Variant of AMD1 Is Associated with Obesity in Urban Indian Children

(2012) Rubina Tabassum et al.   PLoS One

CCL5/CCR1 axis regulates multipotency of human adipose tissue derived stromal cells

(2012) Mari-Liis Kauts et al.   Stem Cell Research

Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling

(2011) Paweł P. Łabaj et al.   BIOINFORMATICS

Genetic architecture of gene expression in ovine skeletal muscle

(2011) Lisette JA Kogelman et al.   BMC GENOMICS

Analysis of Transcriptome Complexity Through RNA Sequencing in Normal and Failing Murine Hearts

(2011) Jae-Hyung Lee et al.   CIRCULATION RESEARCH

Polyamines Are Increased in Obese Children and Are Related to Markers of Oxidative/Nitrosative Stress and Angiogenesis

(2011) Pilar Codoñer-Franch et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

Developments in Obesity Genetics in the Era of Genome-Wide Association Studies

(2011) Felix R. Day et al.   Journal of Nutrigenetics and Nutrigenomics

Microfibrillar-associated protein 5 is linked with markers of obesity-related extracellular matrix remodeling and inflammation

(2011) M Vaittinen et al.   Nutrition & Diabetes

A Decade of Systems Biology

(2010) Han-Yu Chuang et al.   Annual Review of Cell and Developmental Biology

Genetic Polymorphisms of the CACNA2D1 Gene and Their Association with Carcass and Meat Quality Traits in Cattle

(2010) Guan-Yu Hou et al.   BIOCHEMICAL GENETICS

The Critical Role of Neutral Cholesterol Ester Hydrolase 1 in Cholesterol Removal From Human Macrophages

(2010) Masaki Igarashi et al.   CIRCULATION RESEARCH

Nol9 is a novel polynucleotide 5′-kinase involved in ribosomal RNA processing

(2010) Katrin Heindl et al.   EMBO JOURNAL

Deficiency of Chemokine Receptor CCR1 Causes Osteopenia Due to Impaired Functions of Osteoclasts and Osteoblasts

(2010) Akiyoshi Hoshino et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Weighted Gene Coexpression Network Analysis: State of the Art

(2010) Wei Zhao et al.   Journal of Biopharmaceutical Statistics

Novel SNPs of the bovine CACNA2D1 gene and their association with carcass and meat quality traits

(2010) Zheng Rong Yuan et al.   MOLECULAR BIOLOGY REPORTS

Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers

(2010) Haja N. Kadarmideen et al.   Molecular BioSystems

Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index

(2010) Elizabeth K Speliotes et al.   NATURE GENETICS

Module Network Inference from a Cancer Gene Expression Data Set Identifies MicroRNA Regulated Modules

(2010) Eric Bonnet et al.   PLoS One

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

CCL5 Promotes Macrophage Recruitment and Survival in Human Adipose Tissue

(2009) Mayoura Keophiphath et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Class A scavenger receptor promotes osteoclast differentiation via the enhanced expression of receptor activator of NF-κB (RANK)

(2009) Kenichi Takemura et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Module networks revisited: computational assessment and prioritization of model predictions

(2009) A. Joshi et al.   BIOINFORMATICS

Transcript length bias in RNA-seq data confounds systems biology

(2009) Alicia Oshlack et al.   Biology Direct

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks

(2009) Tom Michoel et al.   BMC Systems Biology

Gene Networks and microRNAs Implicated in Aggressive Prostate Cancer

(2009) L. Wang et al.   CANCER RESEARCH

Genetic Variation at the Proprotein Convertase Subtilisin/Kexin Type 5 Gene Modulates High-Density Lipoprotein Cholesterol Levels

(2009) Iulia Iatan et al.   Circulation-Cardiovascular Genetics

Genetic variation in GPR133 is associated with height: genome wide association study in the self-contained population of Sorbs

(2009) Anke Tönjes et al.   HUMAN MOLECULAR GENETICS

Lipolysis in adipocytes

(2009) Maryam Ahmadian et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development

(2009) Vanessa Vermeirssen et al.   Molecular BioSystems

AdPLA ablation increases lipolysis and prevents obesity induced by high-fat feeding or leptin deficiency

(2009) Kathy Jaworski et al.   NATURE MEDICINE

EuroPhenome: a repository for high-throughput mouse phenotyping data

(2009) Hugh Morgan et al.   NUCLEIC ACIDS RESEARCH

BioMart Central Portal—unified access to biological data

(2009) Syed Haider et al.   NUCLEIC ACIDS RESEARCH

Are Natural Killer Cells Protecting the Metabolically Healthy Obese Patient?

(2009) Lydia A. Lynch et al.   Obesity

The skinny on fat: lipolysis and fatty acid utilization in adipocytes

(2009) Maryam Ahmadian et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Transcription factor PU.1 is expressed in white adipose and inhibits adipocyte differentiation

(2008) Fei Wang et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Genetic Variation in Candidate Osteoporosis Genes, Bone Mineral Density, and Fracture Risk: The Study of Osteoporotic Fractures

(2008) Gregory J. Tranah et al.   CALCIFIED TISSUE INTERNATIONAL

Macrophage Content in Subcutaneous Adipose Tissue: Associations With Adiposity, Age, Inflammatory Markers, and Whole-Body Insulin Action in Healthy Pima Indians

(2008) E. Ortega Martinez de Victoria et al.   DIABETES

Using gene expression to investigate the genetic basis of complex disorders

(2008) A. C. Nica et al.   HUMAN MOLECULAR GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS