Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding

MicroRNA Buffering and Altered Variance of Gene Expression in Response to Salmonella Infection

(2014) Hua Bao et al.   PLoS One

The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers

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Gene coexpression network analysis identifies genes and biological processes shared among anterior pituitary and brain areas that affect estrous behavior in dairy cows

(2013) A. Kommadath et al.   JOURNAL OF DAIRY SCIENCE

When Is Hub Gene Selection Better than Standard Meta-Analysis?

(2013) Peter Langfelder et al.   PLoS One

Analyses of pig genomes provide insight into porcine demography and evolution

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Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection

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Shedding light on Salmonella carriers

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Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes

(2011) Jen-hwa Chu et al.   BMC Systems Biology

Gene networks associated with conditional fear in mice identified using a systems genetics approach

(2011) Christopher C Park et al.   BMC Systems Biology

Use of bioinformatic SNP predictions in differentially expressed genes to find SNPs associated with Salmonella colonization in swine

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Innate Immune Control of Salmonella enterica Serovar Typhimurium: Mechanisms Contributing to Combating Systemic Salmonella Infection

(2011) Mary Jo Wick   Journal of Innate Immunity

Distinct Peripheral Blood RNA Responses to Salmonella in Pigs Differing in Salmonella Shedding Levels: Intersection of IFNG, TLR and miRNA Pathways

(2011) Ting-Hua Huang et al.   PLoS One

Is My Network Module Preserved and Reproducible?

(2011) Peter Langfelder et al.   PLoS Computational Biology

Genetic Diversity in Cytokines Associated with Immune Variation and Resistance to Multiple Pathogens in a Natural Rodent Population

(2011) Andrew K. Turner et al.   PLoS Genetics

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Assessing the human immune system through blood transcriptomics

(2010) Damien Chaussabel et al.   BMC BIOLOGY

Genetic control of host resistance to porcine reproductive and respiratory syndrome virus (PRRSV) infection

(2010) Joan K. Lunney et al.   VIRUS RESEARCH

Mapping markers linked to porcine salmonellosis susceptibility

(2009) L. Galina-Pantoja et al.   ANIMAL GENETICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Deletion polymorphism of SIGLEC14 and its functional implications

(2009) M. Yamanaka et al.   GLYCOBIOLOGY

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

Aging Mice Show a Decreasing Correlation of Gene Expression within Genetic Modules

(2009) Lucinda K. Southworth et al.   PLoS Genetics

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Non-typhoidal Salmonella infections in pigs: A closer look at epidemiology, pathogenesis and control

(2008) F. Boyen et al.   VETERINARY MICROBIOLOGY

Correlating blood immune parameters and a CCT7 genetic variant with the shedding of Salmonella enterica serovar Typhimurium in swine

(2008) J.J. Uthe et al.   VETERINARY MICROBIOLOGY