Application of quantitative trait locus mapping and transcriptomics to studies of the senescence-accelerated phenotype in rats

Dickkopf-1, the Wnt antagonist, is induced by acidic pH and mediates epithelial cellular senescence in human reflux esophagitis

(2014) Orestis Lyros et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Metabolism of Very Long-Chain Fatty Acids: Genes and Pathophysiology

(2014) Takayuki Sassa et al.   Biomolecules & Therapeutics

Senescence-accelerated OXYS rats: A model of age-related cognitive decline with relevance to abnormalities in Alzheimer disease

(2014) Natalia Stefanova et al.   CELL CYCLE

A crucial role for the ubiquitously expressed transcription factor Sp1 at early stages of hematopoietic specification

(2014) J. Gilmour et al.   DEVELOPMENT

RNA-Seq for the identification of novel Mediator transcripts in endothelial progenitor cells

(2014) Monica Rienzo et al.   GENE

A single domain of the ZP2 zona pellucida protein mediates gamete recognition in mice and humans

(2014) Matteo A. Avella et al.   JOURNAL OF CELL BIOLOGY

Inflammatory Cytokine Production by Human Neutrophils Involves C/EBP Transcription Factors

(2014) A. Cloutier et al.   JOURNAL OF IMMUNOLOGY

Is age-related macular degeneration a manifestation of systemic disease? New prospects for early intervention and treatment

(2014) C. M. G. Cheung et al.   JOURNAL OF INTERNAL MEDICINE

Loss of the Mammalian DREAM Complex Deregulates Chondrocyte Proliferation

(2014) C. Forristal et al.   MOLECULAR AND CELLULAR BIOLOGY

Altered lipid composition in cortical lipid rafts occurs at early stages of sporadic Alzheimer's disease and facilitates APP/BACE1 interactions

(2014) Noemí Fabelo et al.   NEUROBIOLOGY OF AGING

Characterization of biological pathways associated with a 1.37 Mbp genomic region protective of hypertension in Dahl S rats

(2014) Allen W. Cowley et al.   PHYSIOLOGICAL GENOMICS

Loop de loop: viral RNA evades IFIT1 targeting

(2014) Justin A. Roby et al.   TRENDS IN MICROBIOLOGY

Wnt signaling in the nervous system and in Alzheimer's disease

(2014) N. C. Inestrosa et al.   Journal of Molecular Cell Biology

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

(2014) Rekin's Janky et al.   PLoS Computational Biology

Natural Polymorphisms in Tap2 Influence Negative Selection and CD4∶CD8 Lineage Commitment in the Rat

(2014) Jonatan Tuncel et al.   PLoS Genetics

Hypoxia-inducible factors regulate human and rat cystathionine β-synthase gene expression

(2013) Naoharu Takano et al.   BIOCHEMICAL JOURNAL

Interaction of membrane/lipid rafts with the cytoskeleton: Impact on signaling and function

(2013) Brian P. Head et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Association of AMD-like retinopathy development with an Alzheimer’s disease metabolic pathway in OXYS rats

(2013) Oyuna S. Kozhevnikova et al.   BIOGERONTOLOGY

Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes

(2013) Michael H Farkas et al.   BMC GENOMICS

The Rat Genome Database 2013--data, tools and users

(2013) S. J. F. Laulederkind et al.   BRIEFINGS IN BIOINFORMATICS

Rat retinal transcriptome: Effects of aging and AMD-like retinopathy

(2013) Oyuna S. Kozhevnikova et al.   CELL CYCLE

Up-regulation of NFATc4 Involves in Neuronal Apoptosis Following Intracerebral Hemorrhage

(2013) Lei Li et al.   CELLULAR AND MOLECULAR NEUROBIOLOGY

Mouse models of Prader–Willi Syndrome: A systematic review

(2013) Sandrina Bervini et al.   FRONTIERS IN NEUROENDOCRINOLOGY

Molecular Mediators for Raft-dependent Endocytosis of Syndecan-1, a Highly Conserved, Multifunctional Receptor

(2013) Keyang Chen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Confirming candidate genes for longevity by RT-qPCR using two different genetic backgrounds and selection methods

(2013) Janneke Wit et al.   JOURNAL OF INSECT PHYSIOLOGY

Spatiotemporal Changes in NFATc4 Expression of Retinal Ganglion Cells After Light-Induced Damage

(2013) Yue Xu et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

Characterization of Molecules Binding to the 70K N-Terminal Region of Fibronectin by IFAST Purification Coupled with Mass Spectrometry

(2013) S. Farshid Moussavi-Harami et al.   JOURNAL OF PROTEOME RESEARCH

C/EBPγ Suppresses Senescence and Inflammatory Gene Expression by Heterodimerizing with C/EBPβ

(2013) Christopher J. Huggins et al.   MOLECULAR AND CELLULAR BIOLOGY

Role of Endothelial Soluble Epoxide Hydrolase in Cerebrovascular Function and Ischemic Injury

(2013) Wenri Zhang et al.   PLoS One

HIV-1 Tat-Mediated Induction of CCL5 in Astrocytes Involves NF-κB, AP-1, C/EBPα and C/EBPγ Transcription Factors and JAK, PI3K/Akt and p38 MAPK Signaling Pathways

(2013) Anantha R. Nookala et al.   PLoS One

Oxygen-sensitive mitochondrial accumulation of cystathionine  -synthase mediated by Lon protease

(2013) H. Teng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple Nudix family proteins possess mRNA decapping activity

(2013) M.-G. Song et al.   RNA

A20 in inflammation and autoimmunity

(2013) Leen Catrysse et al.   TRENDS IN IMMUNOLOGY

Loss of Yme1L perturbates mitochondrial dynamics

(2013) Y Ruan et al.   Cell Death & Disease

Genetic architecture of retinal and macular degenerative diseases: the promise and challenges of next-generation sequencing

(2013) Rinki Ratnapriya et al.   Genome Medicine

Binding of TFIIIC to SINE Elements Controls the Relocation of Activity-Dependent Neuronal Genes to Transcription Factories

(2013) Luca Crepaldi et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Degradation of tau protein by autophagy and proteasomal pathways: Figure 1

(2012) Yipeng Wang et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Transcriptome analysis using next-generation sequencing

(2012) Kai-Oliver Mutz et al.   CURRENT OPINION IN BIOTECHNOLOGY

HB-EGF Is Necessary and Sufficient for Müller Glia Dedifferentiation and Retina Regeneration

(2012) Jin Wan et al.   DEVELOPMENTAL CELL

Age-related macular degeneration and coronary heart disease: Evaluation of genetic and environmental associations

(2012) Claudia N. Keilhauer et al.   European Journal of Medical Genetics

Very long-chain fatty acids: elongation, physiology and related disorders

(2012) A. Kihara   JOURNAL OF BIOCHEMISTRY

C1q-induced LRP1B and GPR6 Proteins Expressed Early in Alzheimer Disease Mouse Models, Are Essential for the C1q-mediated Protection against Amyloid-β Neurotoxicity

(2012) Marie E. Benoit et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genetic modifiers of hypertension in soluble guanylate cyclase α1–deficient mice

(2012) Emmanuel S. Buys et al.   JOURNAL OF CLINICAL INVESTIGATION

Natural Gene Therapy May Occur in All Patients with Generalized Non-Herlitz Junctional Epidermolysis Bullosa with COL17A1 Mutations

(2012) Anna M.G. Pasmooij et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Peroxisomal L-bifunctional enzyme (Ehhadh) is essential for the production of medium-chain dicarboxylic acids

(2012) Sander M. Houten et al.   JOURNAL OF LIPID RESEARCH

YME1L controls the accumulation of respiratory chain subunits and is required for apoptotic resistance, cristae morphogenesis, and cell proliferation

(2012) Lukas Stiburek et al.   MOLECULAR BIOLOGY OF THE CELL

Sorting nexin 12 interacts with BACE1 and regulates BACE1-mediated APP processing

(2012) Yonghao Zhao et al.   Molecular Neurodegeneration

Genetics of Immunological and Inflammatory Components in Age-related Macular Degeneration

(2012) Jingsheng Tuo et al.   OCULAR IMMUNOLOGY AND INFLAMMATION

Genetic Dissection of Strain Dependent Paraquat-induced Neurodegeneration in the Substantia Nigra Pars Compacta

(2012) Yun Jiao et al.   PLoS One

CCAAT/Enhancer-Binding Protein γ Is a Critical Regulator of IL-1β-Induced IL-6 Production in Alveolar Epithelial Cells

(2012) Chunguang Yan et al.   PLoS One

Genetic relationships betweenA20/TNFAIP3, chronic inflammation and autoimmune disease

(2011) Lars Vereecke et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Comparing Next-Generation Sequencing and Microarray Technologies in a Toxicological Study of the Effects of Aristolochic Acid on Rat Kidneys

(2011) Zhenqiang Su et al.   CHEMICAL RESEARCH IN TOXICOLOGY

The Dkk1 dose is critical for eye development

(2011) Oliver Lieven et al.   DEVELOPMENTAL BIOLOGY

Genome-wide transcriptome analysis in murine neural retina using high-throughput RNA sequencing

(2011) Ece D. Gamsiz et al.   GENOMICS

Effects of Cistanche deserticola on behavior and signs of cataract and retinopathy in senescence-accelerated OXYS rats

(2011) Natalia A. Stefanova et al.   JOURNAL OF ETHNOPHARMACOLOGY

Novel genes as primary triggers for polygenic hypertension

(2011) Cristina Chauvet et al.   JOURNAL OF HYPERTENSION

Review: Unchained maladie - a reassessment of the role of Ubb+1-capped polyubiquitin chains in Alzheimer's disease

(2011) L. Chadwick et al.   NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY

Parallel findings in age-related macular degeneration and Alzheimer’s disease

(2011) Kyoko Ohno-Matsui   PROGRESS IN RETINAL AND EYE RESEARCH

Brain phenotype of carbonic anhydrase IX-deficient mice

(2011) Pei-wen Pan et al.   TRANSGENIC RESEARCH

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

(2011)   PLOS BIOLOGY

Five Blood Pressure Loci Identified by an Updated Genome-Wide Linkage Scan: Meta-Analysis of the Family Blood Pressure Program

(2010) Jeannette Simino et al.   AMERICAN JOURNAL OF HYPERTENSION

A20 inhibits post-angioplasty restenosis by blocking macrophage trafficking and decreasing adventitial neovascularization

(2010) Scott M. Damrauer et al.   ATHEROSCLEROSIS

The NetAge database: a compendium of networks for longevity, age-related diseases and associated processes

(2010) Robi Tacutu et al.   BIOGERONTOLOGY

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

(2010) William McLaren et al.   BIOINFORMATICS

Treatment With Triamcinolone Acetonide Prevents Decreased Retinal Levels of Decorin in a Rat Model of Oxygen-Induced Retinopathy

(2010) Yeon-Jeong Park et al.   CURRENT EYE RESEARCH

β-Secretase activity in rat astrocytes: translational block of BACE1 and modulation of BACE2 expression

(2010) Barbara Bettegazzi et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Transcriptome analysis and molecular signature of human retinal pigment epithelium

(2010) N.V. Strunnikova et al.   HUMAN MOLECULAR GENETICS

Deletion of CD14 Attenuates Alzheimer's Disease Pathology by Influencing the Brain's Inflammatory Milieu

(2010) E. G. Reed-Geaghan et al.   JOURNAL OF NEUROSCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Clinical and Morphological Characteristics of Chorioretinal Degeneration in Early Aging OXYS Rats

(2009) A. A. Zhdankina et al.   BULLETIN OF EXPERIMENTAL BIOLOGY AND MEDICINE

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Fine Mapping of Gene Regions Regulating Neurodegeneration

(2009) Maria Swanberg et al.   PLoS One

Developmentally dynamic changes of DNA methylation in the mouse Snurf/Snrpn gene

(2008) Kazumi Miyazaki et al.   GENE

The signaling hubs at the crossroad of longevity and age-related disease networks

(2008) Marina Wolfson et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

A Novel Sorting Nexin Modulates Endocytic Trafficking and α-Secretase Cleavage of the Amyloid Precursor Protein

(2008) Susanne Schöbel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY