Gene prediction in metagenomic fragments based on the SVM algorithm

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes

(2011) Xiaobin Zheng et al.   BMC GENOMICS

Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering

(2011) David R. Kelley et al.   NUCLEIC ACIDS RESEARCH

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

A Primer on Metagenomics

(2010) John C. Wooley et al.   PLoS Computational Biology

GENETACK: FRAMESHIFT IDENTIFICATION IN PROTEIN-CODING SEQUENCES BY THE VITERBI ALGORITHM

(2010) IVAN ANTONOV et al.   Journal of Bioinformatics and Computational Biology

MetaTISA: Metagenomic Translation Initiation Site Annotator for improving gene start prediction

(2009) Gang-Qing Hu et al.   BIOINFORMATICS

Gene prediction in metagenomic fragments: A large scale machine learning approach

(2009) Katharina J Hoff et al.   BMC BIOINFORMATICS

The effect of sequencing errors on metagenomic gene prediction

(2009) Katharina J Hoff   BMC GENOMICS

Genome reannotation of Escherichia coli CFT073 with new insights into virulence

(2009) Chengwei Luo et al.   BMC GENOMICS

Prediction of translation initiation site for microbial genomes with TriTISA

(2008) Gang-Qing Hu et al.   BIOINFORMATICS

Computational evaluation of TIS annotation for prokaryotic genomes

(2008) Gang-Qing Hu et al.   BMC BIOINFORMATICS

MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes

(2008) H. Noguchi et al.   DNA RESEARCH

Discovering Functional Novelty in Metagenomes: Examples from Light-Mediated Processes

(2008) A. H. Singh et al.   JOURNAL OF BACTERIOLOGY

A Bioinformatician's Guide to Metagenomics

(2008) V. Kunin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

(2008) Yanzhi Guo et al.   NUCLEIC ACIDS RESEARCH

MetaSim—A Sequencing Simulator for Genomics and Metagenomics

(2008) Daniel C. Richter et al.   PLoS One