Predicting RNA-Protein Interactions Using Only Sequence Information

Emerging roles of RNA and RNA-binding protein network in cancer cells

(2011) Mee-Young Kim et al.   BMB Reports

Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression

(2011) S. Kishore et al.   Briefings in Functional Genomics

Predicting protein associations with long noncoding RNAs

(2011) Matteo Bellucci et al.   NATURE METHODS

Diverse roles of host RNA binding proteins in RNA virus replication

(2011) Zhenghe Li et al.   RNA Biology

RNA-RNA and RNA-protein interactions in coronavirus replication and transcription

(2011) Isabel Sola et al.   RNA Biology

Prediction of protein–RNA binding sites by a random forest method with combined features

(2010) Zhi-Ping Liu et al.   BIOINFORMATICS

Structural characterization and modeling of ncRNA–protein interactions

(2010) J.C. Nacher et al.   BIOSYSTEMS

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

Structure and function of nematode RNA-binding proteins

(2010) Ebru Kaymak et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Non-Protein-Coding RNAs and their Interacting RNA-Binding Proteins in the Plant Cell Nucleus

(2010) Celine Charon et al.   Molecular Plant

PRIDB: a protein-RNA interface database

(2010) B. A. Lewis et al.   NUCLEIC ACIDS RESEARCH

BIPA: a database for protein–nucleic acid interaction in 3D structures

(2009) Semin Lee et al.   BIOINFORMATICS

Geometric similarity between protein-RNA interfaces

(2009) Peng Zhou et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Predicting DNA- and RNA-binding proteins from sequences with kernel methods

(2009) Xiaojian Shao et al.   JOURNAL OF THEORETICAL BIOLOGY

Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks

(2009) N. Mittal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimal protein-RNA area, OPRA: A propensity-based method to identify RNA-binding sites on proteins

(2009) Laura Pérez-Cano et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

(2008) Donny D. Licatalosi et al.   NATURE

Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System

(2008) Daniel J Hogan et al.   PLOS BIOLOGY