RNA-RNA and RNA-protein interactions in coronavirus replication and transcription

Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images

(2010) Apichat Suratanee et al.   BIOINFORMATICS

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

The Cellular RNA Helicase DDX1 Interacts with Coronavirus Nonstructural Protein 14 and Enhances Viral Replication

(2010) L. Xu et al.   JOURNAL OF VIROLOGY

The Coronavirus Nucleocapsid Protein Is Dynamically Associated with the Replication-Transcription Complexes

(2010) M. H. Verheije et al.   JOURNAL OF VIROLOGY

An Interaction between the Nucleocapsid Protein and a Component of the Replicase-Transcriptase Complex Is Crucial for the Infectivity of Coronavirus Genomic RNA

(2010) K. R. Hurst et al.   JOURNAL OF VIROLOGY

Quantitative Proteomics Analysis Reveals BAG3 as a Potential Target To Suppress Severe Acute Respiratory Syndrome Coronavirus Replication

(2010) L. Zhang et al.   JOURNAL OF VIROLOGY

Subgenomic messenger RNA amplification in coronaviruses

(2010) H.-Y. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The terminal loop of a 3′ proximal hairpin plays a critical role in replication and the structure of the 3′ region of Turnip crinkle virus

(2010) Xuefeng Yuan et al.   VIROLOGY

Group-specific structural features of the 5′-proximal sequences of coronavirus genomic RNAs

(2010) Shih-Cheng Chen et al.   VIROLOGY

The envelope protein of severe acute respiratory syndrome coronavirus interacts with the non-structural protein 3 and is ubiquitinated

(2010) Enrique Álvarez et al.   VIROLOGY

Arterivirus Nsp1 Modulates the Accumulation of Minus-Strand Templates to Control the Relative Abundance of Viral mRNAs

(2010) Danny D. Nedialkova et al.   PLoS Pathogens

Infidelity of SARS-CoV Nsp14-Exonuclease Mutant Virus Replication Is Revealed by Complete Genome Sequencing

(2010) Lance D. Eckerle et al.   PLoS Pathogens

Interaction between SARS-CoV helicase and a multifunctional cellular protein (Ddx5) revealed by yeast and mammalian cell two-hybrid systems

(2009) Jin-Yan Chen et al.   ARCHIVES OF VIROLOGY

Cis-acting RNA elements in human and animal plus-strand RNA viruses

(2009) Ying Liu et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

RNA conformational changes in the life cycles of RNA viruses, viroids, and virus-associated RNAs

(2009) Anne E. Simon et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A Functional Genomic Screen Identifies Cellular Cofactors of Hepatitis C Virus Replication

(2009) Andrew W. Tai et al.   Cell Host & Microbe

Evidence for similarity-assisted recombination and predicted stem-loop structure determinant in potato virus X RNA recombination

(2009) H.-K. Draghici et al.   JOURNAL OF GENERAL VIROLOGY

Coronavirus N Protein N-Terminal Domain (NTD) Specifically Binds the Transcriptional Regulatory Sequence (TRS) and Melts TRS-cTRS RNA Duplexes

(2009) Nicholas E. Grossoehme et al.   JOURNAL OF MOLECULAR BIOLOGY

Coronavirus Nucleocapsid Protein Facilitates Template Switching and Is Required for Efficient Transcription

(2009) S. Zuniga et al.   JOURNAL OF VIROLOGY

Mouse Hepatitis Virus Stem-Loop 2 Adopts a uYNMG(U)a-Like Tetraloop Structure That Is Highly Functionally Tolerant of Base Substitutions

(2009) P. Liu et al.   JOURNAL OF VIROLOGY

Bovine Coronavirus Nonstructural Protein 1 (p28) Is an RNA Binding Protein That Binds Terminal Genomic cis-Replication Elements

(2009) K. M. Gustin et al.   JOURNAL OF VIROLOGY

Severe Acute Respiratory Syndrome Coronavirus nsp9 Dimerization Is Essential for Efficient Viral Growth

(2009) Z. J. Miknis et al.   JOURNAL OF VIROLOGY

Severe Acute Respiratory Syndrome Coronavirus Papain-Like Protease Ubiquitin-Like Domain and Catalytic Domain Regulate Antagonism of IRF3 and NF- B Signaling

(2009) M. Frieman et al.   JOURNAL OF VIROLOGY

Dynamics of Coronavirus Replication-Transcription Complexes

(2009) M. C. Hagemeijer et al.   JOURNAL OF VIROLOGY

Murine Hepatitis Virus Nonstructural Protein 4 Regulates Virus-Induced Membrane Modifications and Replication Complex Function

(2009) M. J. Gadlage et al.   JOURNAL OF VIROLOGY

The RNA polymerase activity of SARS-coronavirus nsp12 is primer dependent

(2009) Aartjan J. W. te Velthuis et al.   NUCLEIC ACIDS RESEARCH

Functional screen reveals SARS coronavirus nonstructural protein nsp14 as a novel cap N7 methyltransferase

(2009) Y. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome

(2009) C. Romero-Lopez et al.   RNA

Host cell proteins interacting with the 3′ end of TGEV coronavirus genome influence virus replication

(2009) Carmen Galán et al.   VIROLOGY

A Discontinuous RNA Platform Mediates RNA Virus Replication: Building an Integrated Model for RNA–based Regulation of Viral Processes

(2009) Baodong Wu et al.   PLoS Pathogens

Genome-Scale RNAi Screen for Host Factors Required for HIV Replication

(2008) Honglin Zhou et al.   Cell Host & Microbe

New insights into internal ribosome entry site elements relevant for viral gene expression

(2008) E. Martinez-Salas et al.   JOURNAL OF GENERAL VIROLOGY

Structural Lability in Stem–Loop 1 Drives a 5′ UTR–3′ UTR Interaction in Coronavirus Replication

(2008) Lichun Li et al.   JOURNAL OF MOLECULAR BIOLOGY

A Hepatitis C Virus cis-Acting Replication Element Forms a Long-Range RNA-RNA Interaction with Upstream RNA Sequences in NS5B

(2008) S. Diviney et al.   JOURNAL OF VIROLOGY

Coronavirus Nonstructural Protein 16 Is a Cap-0 Binding Enzyme Possessing (Nucleoside-2'O)-Methyltransferase Activity

(2008) E. Decroly et al.   JOURNAL OF VIROLOGY

Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses

(2008) M. Davis et al.   JOURNAL OF VIROLOGY

Higher-Order RNA Structural Requirements and Small-Molecule Induction of Tombusvirus Subgenomic mRNA Transcription

(2008) S. Wang et al.   JOURNAL OF VIROLOGY

Identification of a Coronavirus Transcription Enhancer

(2008) J. L. Moreno et al.   JOURNAL OF VIROLOGY

Proteomics Analysis Unravels the Functional Repertoire of Coronavirus Nonstructural Protein 3

(2008) B. W. Neuman et al.   JOURNAL OF VIROLOGY

Topology and Membrane Anchoring of the Coronavirus Replication Complex: Not All Hydrophobic Domains of nsp3 and nsp6 Are Membrane Spanning

(2008) M. Oostra et al.   JOURNAL OF VIROLOGY

Mouse Hepatitis Virus Liver Pathology Is Dependent on ADP-Ribose-1''-Phosphatase, a Viral Function Conserved in the Alpha-Like Supergroup

(2008) K. K. Eriksson et al.   JOURNAL OF VIROLOGY

WHEP Domains Direct Noncanonical Function of Glutamyl-Prolyl tRNA Synthetase in Translational Control of Gene Expression

(2008) Jie Jia et al.   MOLECULAR CELL

Genome-Wide Analysis of Protein-Protein Interactions and Involvement of Viral Proteins in SARS-CoV Replication

(2008) Ji'An Pan et al.   PLoS One

A complex RNA motif defined by three discontinuous 5-nucleotide-long strands is essential for Flavivirus RNA replication

(2008) B.-H. Song et al.   RNA

Identification of Host Proteins Required for HIV Infection Through a Functional Genomic Screen

(2008) Abraham L. Brass et al.   SCIENCE

West Nile virus genome cyclization and RNA replication require two pairs of long-distance RNA interactions

(2008) Bo Zhang et al.   VIROLOGY

Mutation in murine coronavirus replication protein nsp4 alters assembly of double membrane vesicles

(2008) Mark A. Clementz et al.   VIROLOGY

Genome cyclization as strategy for flavivirus RNA replication

(2008) Sergio M. Villordo et al.   VIRUS RESEARCH

SARS-Coronavirus Replication Is Supported by a Reticulovesicular Network of Modified Endoplasmic Reticulum

(2008) Kèvin Knoops et al.   PLOS BIOLOGY

SARS-Coronavirus Replication/Transcription Complexes Are Membrane-Protected and Need a Host Factor for Activity In Vitro

(2008) Martijn J. van Hemert et al.   PLoS Pathogens