Modeling nucleosome position distributions from experimental nucleosome positioning maps

NucleoFinder: a statistical approach for the detection of nucleosome positions

(2013) J. Becker et al.   BIOINFORMATICS

NORMAL: accurate nucleosome positioning using a modified Gaussian mixture model

(2012) A. Polishko et al.   BIOINFORMATICS

Micrococcal Nuclease Does Not Substantially Bias Nucleosome Mapping

(2012) James Allan et al.   JOURNAL OF MOLECULAR BIOLOGY

Genome-wide nucleosome positioning during embryonic stem cell development

(2012) Vladimir B Teif et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Probabilistic Inference for Nucleosome Positioning with MNase-Based or Sonicated Short-Read Data

(2012) Xuekui Zhang et al.   PLoS One

nucleR: a package for non-parametric nucleosome positioning

(2011) O. Flores et al.   BIOINFORMATICS

Calculating transcription factor binding maps for chromatin

(2011) V. B. Teif et al.   BRIEFINGS IN BIOINFORMATICS

High-Resolution Genome-wide Mapping of the Primary Structure of Chromatin

(2011) Zhenhai Zhang et al.   CELL

Determinants of nucleosome organization in primary human cells

(2011) Anton Valouev et al.   NATURE

Nucleosome positioning in a model of active chromatin remodeling enzymes

(2011) R. Padinhateeri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome

(2011) Z. Zhang et al.   SCIENCE

The Effect of Micrococcal Nuclease Digestion on Nucleosome Positioning Data

(2010) Ho-Ryun Chung et al.   PLoS One

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

(2009) A. Weiner et al.   GENOME RESEARCH

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

(2009) Yong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nucleosome positioning from tiling microarray data

(2008) M. Yassour et al.   BIOINFORMATICS

GeneTrack--a genomic data processing and visualization framework

(2008) I. Albert et al.   BIOINFORMATICS

Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq

(2008) Yong Zhang et al.   BMC GENOMICS

Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells

(2008) Xi Chen et al.   CELL

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

(2008) A. Valouev et al.   GENOME RESEARCH

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

(2008) S. Cuddapah et al.   GENOME RESEARCH

The Insulator Binding Protein CTCF Positions 20 Nucleosomes around Its Binding Sites across the Human Genome

(2008) Yutao Fu et al.   PLoS Genetics