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Nucleosome Positioning, Nucleosome Spacing and the Nucleosome Code

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High-Resolution Genome-wide Mapping of the Primary Structure of Chromatin

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PICS: Probabilistic Inference for ChIP-seq

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Distinct Factors Control Histone Variant H3.3 Localization at Specific Genomic Regions

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Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

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Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

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Discovery and characterization of chromatin states for systematic annotation of the human genome

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The NIH Roadmap Epigenomics Mapping Consortium

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Nucleosome dynamics define transcriptional enhancers

(2010) Housheng Hansen He et al.   NATURE GENETICS

Serotonin regulates pancreatic beta cell mass during pregnancy

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Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

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Nucleosome positioning: How is it established, and why does it matter?

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High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

(2009) Nathaniel D. Heintzman et al.   NATURE

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

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Inducible Nucleosome Depletion at OREBP-Binding-Sites by Hypertonic Stress

(2009) Edith H. Y. Tong et al.   PLoS One

A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome

(2009) Cizhong Jiang et al.   GENOME BIOLOGY

Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq

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Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

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The DNA-encoded nucleosome organization of a eukaryotic genome

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