SNP discovery and gene annotation in the surf clamMesodesma donacium

Methodological streamlining of SNP discovery and genotyping via high-resolution melting analysis (HRMA) in non-model species

(2012) Brad L. Smith et al.   Marine Genomics

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

(2012) V. CAHAIS et al.   Molecular Ecology Resources

Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach

(2012) Marvin Mundry et al.   PLoS One

Transcriptome Analysis of the Oriental River Prawn, Macrobrachium nipponense Using 454 Pyrosequencing for Discovery of Genes and Markers

(2012) Keyi Ma et al.   PLoS One

Transcriptome Analysis and SSR/SNP Markers Information of the Blunt Snout Bream (Megalobrama amblycephala)

(2012) Zexia Gao et al.   PLoS One

Mining of EST-SSR from 454 pyrosequencing in the surf clam Mesodesma donacium (Lamark, 1818)

(2012) A. Aguilar-Espinoza et al.   Conservation Genetics Resources

Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis

(2011) Paola Venier et al.   BMC GENOMICS

Polymorphism in a serine protease inhibitor gene and its association with disease resistance in the eastern oyster (Crassostrea virginica Gmelin)

(2011) Haiyang Yu et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptomic Analysis of the Clam Meretrix meretrix on Different Larval Stages

(2011) Pin Huan et al.   MARINE BIOTECHNOLOGY

Transcriptome analysis in Concholepas concholepas (Gastropoda, Muricidae): Mining and characterization of new genomic and molecular markers

(2011) Leyla Cárdenas et al.   Marine Genomics

De Novo Assembly of the Manila Clam Ruditapes philippinarum Transcriptome Provides New Insights into Expression Bias, Mitochondrial Doubly Uniparental Inheritance and Sex Determination

(2011) F. Ghiselli et al.   MOLECULAR BIOLOGY AND EVOLUTION

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

(2011) M. V. EVERETT et al.   Molecular Ecology Resources

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

(2011) J. E. SEEB et al.   Molecular Ecology Resources

Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing

(2010) Liusuo Zhang et al.   AQUACULTURE

Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing

(2010) Melody S Clark et al.   BMC GENOMICS

Comparing de novo assemblers for 454 transcriptome data

(2010) Sujai Kumar et al.   BMC GENOMICS

RNA deep sequencing of the Atlantic cod transcriptome

(2010) Steinar D. Johansen et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

A guide to the genomics of ecological speciation in natural animal populations

(2010) Amber M. Rice et al.   ECOLOGY LETTERS

The RNA-Seq approach to studying the expression of mosquito mitochondrial genes

(2010) M. Neira-Oviedo et al.   INSECT MOLECULAR BIOLOGY

Genomic resources for flatfish research and their applications

(2010) J. Cerdà et al.   JOURNAL OF FISH BIOLOGY

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonusspp. Salmonidae)

(2010) SÉBASTIEN RENAUT et al.   MOLECULAR ECOLOGY

Advances in pharmacogenomics technologies

(2010) C Ramana Bhasker et al.   PHARMACOGENOMICS

Conservation genetics in transition to conservation genomics

(2010) N. Joop Ouborg et al.   TRENDS IN GENETICS

Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species

(2009) Diana Bellin et al.   BMC GENOMICS

RNA-seq: from technology to biology

(2009) Samuel Marguerat et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Sequence Divergence of Heat Shock Genes within and among 3 Oncorhynchids

(2009) S. R. Narum et al.   JOURNAL OF HEREDITY

RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing

(2009) Brian T. Wilhelm et al.   METHODS

Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing

(2008) Christopher W. Wheat   GENETICA

Analysis of Hsp70 in Litopenaeus Vannamei and Detection of SNPs

(2008) Digang Zeng et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Increasing genomic information in bivalves through new EST collections in four species: Development of new genetic markers for environmental studies and genome evolution

(2007) Arnaud Tanguy et al.   GENE

Sequencing breakthroughs for genomic ecology and evolutionary biology

(2007) MATTHEW E. HUDSON   Molecular Ecology Resources