Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach
出版年份 2012 全文链接
标题
Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach
作者
关键词
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出版物
PLoS One
Volume 7, Issue 2, Pages e31410
出版商
Public Library of Science (PLoS)
发表日期
2012-02-28
DOI
10.1371/journal.pone.0031410
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum
- (2013) Joshua P Der et al. BMC GENOMICS
- Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing
- (2011) Haiyuan Yang et al. BMC GENOMICS
- Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea
- (2011) Josep F Abril et al. BMC GENOMICS
- Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing
- (2011) Susanne U Franssen et al. BMC GENOMICS
- Pyrosequencing the transcriptome of the greenhouse whitefly, Trialeurodes vaporariorum reveals multiple transcripts encoding insecticide targets and detoxifying enzymes
- (2011) Nikos Karatolos et al. BMC GENOMICS
- Population transcriptomics of Drosophila melanogaster females
- (2011) Lena Müller et al. BMC GENOMICS
- De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)
- (2011) Maria D Logacheva et al. BMC GENOMICS
- The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus
- (2011) Ben Ewen-Campen et al. BMC GENOMICS
- Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)
- (2011) José Blanca et al. BMC GENOMICS
- Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]
- (2011) Sutapa Dutta et al. BMC PLANT BIOLOGY
- Transcriptional plasticity of a soil arthropod across different ecological conditions
- (2011) TJALF E. DE BOER et al. MOLECULAR ECOLOGY
- Transcriptomics of the Bed Bug (Cimex lectularius)
- (2011) Xiaodong Bai et al. PLoS One
- Antarctic Krill 454 Pyrosequencing Reveals Chaperone and Stress Transcriptome
- (2011) Melody S. Clark et al. PLoS One
- A high-throughput venom-gland transcriptome for the Eastern Diamondback Rattlesnake (Crotalus adamanteus) and evidence for pervasive positive selection across toxin classes
- (2011) Darin R. Rokyta et al. TOXICON
- A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences
- (2010) Tonia S Schwartz et al. BMC GENOMICS
- Deep sequencing of New World screw-worm transcripts to discover genes involved in insecticide resistance
- (2010) Renato A Carvalho et al. BMC GENOMICS
- Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel
- (2010) Alessandro Coppe et al. BMC GENOMICS
- Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
- (2010) Mohamed Salem et al. BMC GENOMICS
- High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus
- (2010) Raul Bettencourt et al. BMC GENOMICS
- Comparing de novo assemblers for 454 transcriptome data
- (2010) Sujai Kumar et al. BMC GENOMICS
- Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures
- (2010) Isabel Desgagné-Penix et al. BMC PLANT BIOLOGY
- Mining the bitter melon (momordica charantia l.) seed transcriptome by 454 analysis of non-normalized and normalized cDNA populations for conjugated fatty acid metabolism-related genes
- (2010) Peizhen Yang et al. BMC PLANT BIOLOGY
- Teladorsagia circumcincta: The transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro
- (2010) Alison J. Dicker et al. EXPERIMENTAL PARASITOLOGY
- First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach
- (2010) Cinzia Cantacessi et al. INFECTION GENETICS AND EVOLUTION
- An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis
- (2010) J. GALINDO et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- New approach for the study of mite reproduction: The first transcriptome analysis of a mite, Phytoseiulus persimilis (Acari: Phytoseiidae)
- (2010) Ana R. Cabrera et al. JOURNAL OF INSECT PHYSIOLOGY
- Sequence Information on Simple Sequence Repeats and Single Nucleotide Polymorphisms through Transcriptome Analysis of Mungbean
- (2010) Kyaw Thu Moe et al. Journal of Integrative Plant Biology
- Endosymbiotic Gene Transfer and Transcriptional Regulation of Transferred Genes in Paulinella chromatophora
- (2010) E. C. M. Nowack et al. MOLECULAR BIOLOGY AND EVOLUTION
- Interpopulation patterns of divergence and selection across the transcriptome of the copepod Tigriopus californicus
- (2010) FELIPE S. BARRETO et al. MOLECULAR ECOLOGY
- The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing
- (2010) JULIE JEUKENS et al. MOLECULAR ECOLOGY
- Characterization of the horseweed (Conyza canadensis) transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of candidate non-target herbicide resistance genes
- (2010) Yanhui Peng et al. PEST MANAGEMENT SCIENCE
- Characterization of de novo transcriptome for waterhemp (Amaranthus tuberculatus) using GS-FLX 454 pyrosequencing and its application for studies of herbicide target-site genes
- (2010) Chance W Riggins et al. PEST MANAGEMENT SCIENCE
- Tissue-Specific Transcriptomics of the Exotic Invasive Insect Pest Emerald Ash Borer (Agrilus planipennis)
- (2010) Omprakash Mittapalli et al. PLoS One
- Next generation transcriptomes for next generation genomes using est2assembly
- (2009) Alexie Papanicolaou et al. BMC BIOINFORMATICS
- Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing
- (2009) Shrinivasrao P Mane et al. BMC GENOMICS
- Accurate whole human genome sequencing using reversible terminator chemistry
- (2008) David R. Bentley et al. NATURE
- Ensembl 2009
- (2008) T. J. P. Hubbard et al. NUCLEIC ACIDS RESEARCH
- MetaSim—A Sequencing Simulator for Genomics and Metagenomics
- (2008) Daniel C. Richter et al. PLoS One
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