Heterotroph Interactions Alter Prochlorococcus Transcriptome Dynamics during Extended Periods of Darkness

Degradation of hydrogen peroxide at the ocean’s surface: the influence of the microbial community on the realized thermal niche of Prochlorococcus

(2017) Lanying Ma et al.   ISME Journal

Nitrogen cost minimization is promoted by structural changes in the transcriptome of N-deprived Prochlorococcus cells

(2017) Robert W Read et al.   ISME Journal

Metabolic evolution and the self-organization of ecosystems

(2017) Rogier Braakman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Glucose Uptake in Prochlorococcus: Diversity of Kinetics and Effects on the Metabolism

(2017) María del Carmen Muñoz-Marín et al.   Frontiers in Microbiology

Nutrient recycling facilitates long-term stability of marine microbial phototroph–heterotroph interactions

(2017) Joseph A. Christie-Oleza et al.   Nature Microbiology

Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership

(2017) Hans C. Bernstein et al.   mSystems

Costs of Clock-Environment Misalignment in Individual Cyanobacterial Cells

(2016) Guillaume Lambert et al.   BIOPHYSICAL JOURNAL

Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus

(2016) Steven J Biller et al.   ISME Journal

Global genetic capacity for mixotrophy in marine picocyanobacteria

(2016) Alexis P Yelton et al.   ISME Journal

Transcriptional response of Prochlorococcus to co-culture with a marine Alteromonas: differences between strains and the involvement of putative infochemicals

(2016) Dikla Aharonovich et al.   ISME Journal

Diel regulation of hydrogen peroxide defenses by open ocean microbial communities

(2016) J. Jeffrey Morris et al.   JOURNAL OF PLANKTON RESEARCH

Survival ofProchlorococcusin extended darkness

(2016) Allison Coe et al.   LIMNOLOGY AND OCEANOGRAPHY

The Entner–Doudoroff pathway is an overlooked glycolytic route in cyanobacteria and plants

(2016) Xi Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The stringent response regulates adaptation to darkness in the cyanobacteriumSynechococcus elongatus

(2016) Rachel D. Hood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diurnal Regulation of Cellular Processes in the Cyanobacterium Synechocystis sp. Strain PCC 6803: Insights from Transcriptomic, Fluxomic, and Physiological Analyses

(2016) Rajib Saha et al.   mBio

Giving Time Purpose: TheSynechococcus elongatusClock in a Broader Network Context

(2015) Ryan K. Shultzaberger et al.   Annual Review of Genetics

Circadian Rhythms in Cyanobacteria

(2015) Susan E. Cohen et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

(2015) S. A. Amin et al.   NATURE

Light-driven synchrony ofProchlorococcusgrowth and mortality in the subtropical Pacific gyre

(2015) Francois Ribalet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Daily Expression Pattern of Protein-Encoding Genes and Small Noncoding RNAs in Synechocystis sp. Strain PCC 6803

(2014) Christian Beck et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Distribution and diversity ofProchlorococcusecotypes in the Red Sea

(2014) Ahmed A. Shibl et al.   FEMS MICROBIOLOGY LETTERS

Inference of interactions in cyanobacterial–heterotrophic co-cultures via transcriptome sequencing

(2014) Alexander S Beliaev et al.   ISME Journal

Physiology and evolution of nitrate acquisition in Prochlorococcus

(2014) Paul M Berube et al.   ISME Journal

Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity

(2014) Karsten Voigt et al.   ISME Journal

Prochlorococcus: the structure and function of collective diversity

(2014) Steven J. Biller et al.   NATURE REVIEWS MICROBIOLOGY

Cryptic carbon and sulfur cycling between surface ocean plankton

(2014) Bryndan P. Durham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages

(2014) E. A. Ottesen et al.   SCIENCE

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Prochlorococcus can use the Pro1404 transporter to take up glucose at nanomolar concentrations in the Atlantic Ocean

(2013) M. d. C. Munoz-Marin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pattern and synchrony of gene expression among sympatric marine microbial populations

(2013) E. A. Ottesen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle

(2012) Jacob R. Waldbauer et al.   PLoS One

Oxidized quinones signal onset of darkness directly to the cyanobacterial circadian oscillator

(2012) Y.-I. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

(2012) Georgia Giannoukos et al.   GENOME BIOLOGY

Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean

(2011) Pia H Moisander et al.   ISME Journal

Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria

(2011) Daniel Sher et al.   ISME Journal

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

(2011) Hana Yi et al.   NUCLEIC ACIDS RESEARCH

Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface

(2011) J. Jeffrey Morris et al.   PLoS One

Light-Driven Changes in Energy Metabolism Directly Entrain the Cyanobacterial Circadian Oscillator

(2011) M. J. Rust et al.   SCIENCE

Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

(2010) Rex R Malmstrom et al.   ISME Journal

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

(2010) Yanmei Shi et al.   ISME Journal

Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus

(2010) Claudia Steglich et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

(2009) P. D. Karp et al.   BRIEFINGS IN BIOINFORMATICS

Whole-genome microarray analyses ofSynechococcus-Vibriointeractions

(2009) Vera Tai et al.   ENVIRONMENTAL MICROBIOLOGY

Biochemical Evidence for a Timing Mechanism in Prochlorococcus

(2009) I. M. Axmann et al.   JOURNAL OF BACTERIOLOGY

Choreography of the Transcriptome, Photophysiology, and Cell Cycle of a Minimal Photoautotroph, Prochlorococcus

(2009) Erik R. Zinser et al.   PLoS One

Bistability, Epigenetics, and Bet-Hedging in Bacteria

(2008) Jan-Willem Veening et al.   Annual Review of Microbiology

Redox Regulation of Cell Survival

(2008) Dunyaporn Trachootham et al.   ANTIOXIDANTS & REDOX SIGNALING

Facilitation of Robust Growth of Prochlorococcus Colonies and Dilute Liquid Cultures by "Helper" Heterotrophic Bacteria

(2008) J. J. Morris et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis

(2008) Matthias E. Futschik et al.   BIOINFORMATICS

Genome Streamlining Results in Loss of Robustness of the Circadian Clock in the Marine Cyanobacterium Prochlorococcus marinus PCC 9511

(2008) Julia Holtzendorff et al.   JOURNAL OF BIOLOGICAL RHYTHMS