Non-parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen

Comparative Transcriptome Analyses inZymoseptoria triticiReveal Significant Differences in Gene Expression Among Strains During Plant Infection

(2017) Javier Palma-Guerrero et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Interactions between the Powdery Mildew Effector BEC1054 and Barley Proteins Identify Candidate Host Targets

(2016) Helen G. Pennington et al.   JOURNAL OF PROTEOME RESEARCH

Comparative transcriptomic analyses ofZymoseptoria triticistrains show complex lifestyle transitions and intraspecific variability in transcription profiles

(2016) Javier Palma-Guerrero et al.   MOLECULAR PLANT PATHOLOGY

Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species

(2016) Fabrizio Menardo et al.   NATURE GENETICS

AvrPm2 encodes an RNase-like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungus

(2016) Coraline R. Praz et al.   NEW PHYTOLOGIST

Allelic barley MLA immune receptors recognize sequence-unrelated avirulence effectors of the powdery mildew pathogen

(2016) Xunli Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies

(2016) Jingjing Liao et al.   eLife

Comparative Transcriptomic Analysis of Virulence Factors in Leptosphaeria maculans during Compatible and Incompatible Interactions with Canola

(2016) Humira Sonah et al.   Frontiers in Plant Science

Avirulence Genes in Cereal Powdery Mildews: The Gene-for-Gene Hypothesis 2.0

(2016) Salim Bourras et al.   Frontiers in Plant Science

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

Genetic and molecular characterization of a locus involved in avirulence of Blumeria graminis f. sp. tritici on wheat Pm3 resistance alleles

(2015) Francis Parlange et al.   FUNGAL GENETICS AND BIOLOGY

Identification and selection of normalization controls for quantitative transcript analysis in B lumeria graminis

(2015) Helen G. Pennington et al.   MOLECULAR PLANT PATHOLOGY

Multiple Avirulence Loci and Allele-Specific Effector Recognition Control thePm3Race-Specific Resistance of Wheat to Powdery Mildew

(2015) Salim Bourras et al.   PLANT CELL

The Barley Powdery Mildew Candidate Secreted Effector Protein CSEP0105 Inhibits the Chaperone Activity of a Small Heat Shock Protein

(2015) Ali Abdurehim Ahmed et al.   PLANT PHYSIOLOGY

Transcriptome and Metabolite Profiling of the Infection Cycle ofZymoseptoria triticion Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition

(2015) Jason J. Rudd et al.   PLANT PHYSIOLOGY

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Expression Profiling of the Wheat Pathogen Zymoseptoria tritici Reveals Genomic Patterns of Transcription and Host-Specific Regulatory Programs

(2014) Ronny Kellner et al.   Genome Biology and Evolution

eulerAPE: Drawing Area-Proportional 3-Venn Diagrams Using Ellipses

(2014) Luana Micallef et al.   PLoS One

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors

(2013) Dario Cantu et al.   BMC GENOMICS

Formae specialesof cereal powdery mildew: close or distant relatives?

(2013) Veronique Troch et al.   MOLECULAR PLANT PATHOLOGY

Host-Induced Gene Silencing in Barley Powdery Mildew Reveals a Class of Ribonuclease-Like Effectors

(2013) Clara Pliego et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph

(2013) Thomas Wicker et al.   NATURE GENETICS

The importance of non-penetrated papillae formation in the resistance response of triticale to powdery mildew (Blumeria graminis)

(2013) V. Troch et al.   PLANT PATHOLOGY

Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing

(2013) Diana P. Garnica et al.   PLoS One

Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts

(2013) S. Hacquard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Phylogeography and virulence structure of the powdery mildew population on its 'new' host triticale

(2012) Veronique Troch et al.   BMC EVOLUTIONARY BIOLOGY

Structure and evolution of barley powdery mildew effector candidates

(2012) Carsten Pedersen et al.   BMC GENOMICS

Interaction of barley powdery mildew effector candidate CSEP0055 with the defence protein PR17c

(2012) Wen-Jing Zhang et al.   MOLECULAR PLANT PATHOLOGY

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

(2012) Diane G. O. Saunders et al.   PLoS One

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction

(2012) Yoshihiro Kawahara et al.   PLoS One

The Ustilago maydis Effector Pep1 Suppresses Plant Immunity by Inhibition of Host Peroxidase Activity

(2012) Christoph Hemetsberger et al.   PLoS Pathogens

Global status of wheat leaf rust caused by Puccinia triticina

(2011) J. Huerta-Espino et al.   EUPHYTICA

A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome

(2011) Francis Parlange et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors inMelampsora larici-populina(Poplar Leaf Rust)

(2011) Stéphane Hacquard et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A molecular evolutionary concept connecting nonhost resistance, pathogen host range, and pathogen speciation

(2011) Paul Schulze-Lefert et al.   TRENDS IN PLANT SCIENCE

Co-evolutionary interactions between host resistance and pathogen effector genes in flax rust disease

(2010) MICHAEL RAVENSDALE et al.   MOLECULAR PLANT PATHOLOGY

Conserved Fungal LysM Effector Ecp6 Prevents Chitin-Triggered Immunity in Plants

(2010) R. de Jonge et al.   SCIENCE

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The Majority of the Type III Effector Inventory ofPseudomonas syringaepv.tomatoDC3000 Can Suppress Plant Immunity

(2009) Ming Guo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Bacterial Effectors Target the Common Signaling Partner BAK1 to Disrupt Multiple MAMP Receptor-Signaling Complexes and Impede Plant Immunity

(2008) Libo Shan et al.   Cell Host & Microbe

Pseudomonas syringae Effector AvrPto Blocks Innate Immunity by Targeting Receptor Kinases

(2008) Tingting Xiang et al.   CURRENT BIOLOGY

Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistance

(2008) Paul RJ Birch et al.   CURRENT OPINION IN PLANT BIOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH