Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts

Structure and evolution of barley powdery mildew effector candidates

(2012) Carsten Pedersen et al.   BMC GENOMICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Interaction of barley powdery mildew effector candidate CSEP0055 with the defence protein PR17c

(2012) Wen-Jing Zhang et al.   MOLECULAR PLANT PATHOLOGY

Origin and evolution of the powdery mildews (Ascomycota, Erysiphales)

(2012) Susumu Takamatsu   MYCOSCIENCE

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species

(2012) E. H. Stukenbrock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation of NLR-triggered immunity across plant lineages

(2012) T. Maekawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Obligate biotroph parasitism: can we link genomes to lifestyles?

(2012) Eric Kemen et al.   TRENDS IN PLANT SCIENCE

Sequential Delivery of Host-Induced Virulence Effectors by Appressoria and Intracellular Hyphae of the Phytopathogen Colletotrichum higginsianum

(2012) Jochen Kleemann et al.   PLoS Pathogens

Coiled-Coil Domain-Dependent Homodimerization of Intracellular Barley Immune Receptors Defines a Minimal Functional Module for Triggering Cell Death

(2011) Takaki Maekawa et al.   Cell Host & Microbe

Identification and structure of the mating-type locus and development of PCR-based markers for mating type in powdery mildew fungi

(2011) Marin Talbot Brewer et al.   FUNGAL GENETICS AND BIOLOGY

Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei

(2011) Laurence V. Bindschedler et al.   METHODS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Melampsora larici-populina Transcript Profiling During Germination and Timecourse Infection of Poplar Leaves Reveals Dynamic Expression Patterns Associated with Virulence and Biotrophy

(2011) Sébastien Duplessis et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors inMelampsora larici-populina(Poplar Leaf Rust)

(2011) Stéphane Hacquard et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Gain and Loss during Evolution of Obligate Parasitism in the White Rust Pathogen of Arabidopsis thaliana

(2011) Eric Kemen et al.   PLOS BIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.)

(2010) David L Joly et al.   BMC GENOMICS

Powdery mildew fungal effector candidates share N-terminal Y/F/WxC-motif

(2010) Dale Godfrey et al.   BMC GENOMICS

Comparative sequence analysis of wheat and barley powdery mildew fungi reveals gene colinearity, dates divergence and indicates host-pathogen co-evolution

(2010) Simone Oberhaensli et al.   FUNGAL GENETICS AND BIOLOGY

Diversity at theMlaPowdery Mildew Resistance Locus from Cultivated Barley Reveals Sites of Positive Selection

(2010) Sabine Seeholzer et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves

(2010) Stéphane Hacquard et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

HIGS: Host-Induced Gene Silencing in the Obligate Biotrophic Fungal PathogenBlumeria graminis

(2010) Daniela Nowara et al.   PLANT CELL

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

(2010) L. Baxter et al.   SCIENCE

Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage

(2010) S. Raffaele et al.   SCIENCE

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Genetical studies of spontaneous sources of resistance to powdery mildew in barley

(2009) A. WIBERG   HEREDITAS

Ten things to know about oomycete effectors

(2009) SEBASTIAN SCHORNACK et al.   MOLECULAR PLANT PATHOLOGY

Coevolution between a Family of Parasite Virulence Effectors and a Class of LINE-1 Retrotransposons

(2009) Soledad Sacristán et al.   PLoS One

A proteomics study of barley powdery mildew haustoria

(2009) Dale Godfrey et al.   PROTEOMICS

Terrific Protein Traffic: The Mystery of Effector Protein Delivery by Filamentous Plant Pathogens

(2009) R. Panstruga et al.   SCIENCE

The Origins of Plant Pathogens in Agro-Ecosystems

(2008) Eva H. Stukenbrock et al.   Annual Review of Phytopathology

Independent evolution of functionalPm3resistance genes in wild tetraploid wheat and domesticated bread wheat

(2008) Nabila Yahiaoui et al.   PLANT JOURNAL

RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members

(2008) R. H. Y. Jiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA