Sediment Depth-Dependent Spatial Variations of Bacterial Communities in Mud Deposits of the Eastern China Marginal Seas

Permeability shapes bacterial communities in sublittoral surface sediments

(2017) D. Probandt et al.   ENVIRONMENTAL MICROBIOLOGY

Spatiotemporal variation of bacterial and archaeal communities in sediments of a drinking reservoir, Beijing, China

(2016) Yongjuan Chen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Elevated nutrients change bacterial community composition and connectivity: high throughput sequencing of young marine biofilms

(2016) Jasmin C. Lawes et al.   BIOFOULING

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic

(2016) Christin M. Bennke et al.   ENVIRONMENTAL MICROBIOLOGY

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments

(2016) Stefan Dyksma et al.   ISME Journal

Diversity and Abundance of the Denitrifying Microbiota in the Sediment of Eastern China Marginal Seas and the Impact of Environmental Factors

(2016) Minghong Gao et al.   MICROBIAL ECOLOGY

Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure

(2016) Deric R. Learman et al.   Frontiers in Microbiology

Diversity, Abundance, and Niche Differentiation of Ammonia-Oxidizing Prokaryotes in Mud Deposits of the Eastern China Marginal Seas

(2016) Shaolan Yu et al.   Frontiers in Microbiology

Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan

(2015) Takuro Nunoura et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover

(2015) Yuting Liang et al.   ISME Journal

Bacterial diversity and community composition from seasurface to subseafloor

(2015) Emily A Walsh et al.   ISME Journal

Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics

(2015) Rendy Ruvindy et al.   ISME Journal

Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor

(2015) Tan T. Nguyen et al.   Frontiers in Microbiology

Biogeography of the Sediment Bacterial Community Responds to a Nitrogen Pollution Gradient in the East China Sea

(2014) Jinbo Xiong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Development and application of primers for the classDehalococcoidia(phylumChloroflexi) enables deep insights into diversity and stratification of subgroups in the marine subsurface

(2014) Kenneth Wasmund et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial and Archaeal Communities in Sediments of the North Chinese Marginal Seas

(2014) Jiwen Liu et al.   MICROBIAL ECOLOGY

Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)

(2014) Ibrahim F. Farag et al.   PLoS One

Spatial distribution patterns of benthic microbial communities along the Pearl Estuary, China

(2014) Jiwen Liu et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Sulphur-oxidizing and sulphate-reducing communities in Brazilian mangrove sediments

(2013) Maryeimy Varon-Lopez et al.   ENVIRONMENTAL MICROBIOLOGY

Core sediment bacteria drive community response to anthropogenic contamination over multiple environmental gradients

(2013) Melanie Y. Sun et al.   ENVIRONMENTAL MICROBIOLOGY

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

Bacterial diversity of the sediments transiting through the gut of Holothuria scabra (Holothuroidea; Echinodermata)

(2013) Thomas Plotieau et al.   MARINE BIOLOGY

Analysis of the bacterial community in the two typical intertidal sediments of Bohai Bay, China by pyrosequencing

(2013) Liping Wang et al.   MARINE POLLUTION BULLETIN

Bacterial community structure and its regulating factors in the intertidal sediment along the Liaodong Bay of Bohai Sea, China

(2013) Binghui Zheng et al.   MICROBIOLOGICAL RESEARCH

Spatial Variations in Microbial Community Composition in Surface Seawater from the Ultra-Oligotrophic Center to Rim of the South Pacific Gyre

(2013) Qi Yin et al.   PLoS One

Interactive effects of global climate change and pollution on marine microbes: the way ahead

(2013) Francisco J. R. C. Coelho et al.   Ecology and Evolution

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

(2012) Yu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau

(2012) Jinbo Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

Sources, dispersal and preservation of sedimentary organic matter in the Yellow Sea: The importance of depositional hydrodynamic forcing

(2012) Limin Hu et al.   MARINE GEOLOGY

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aerobic Microbial Respiration in 86-Million-Year-Old Deep-Sea Red Clay

(2012) H. Roy et al.   SCIENCE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Microbial diversity and stratification of South Pacific abyssal marine sediments

(2011) Alan M. Durbin et al.   ENVIRONMENTAL MICROBIOLOGY

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

(2011) Yong Kong   GENOMICS

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Influence of Plant Polymers on the Distribution and Cultivation of Bacteria in the PhylumAcidobacteria

(2010) Stephanie A. Eichorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea

(2010) Mia M Bengtsson et al.   BMC MICROBIOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Variations in Archaeal and Bacterial Diversity Associated with the Sulfate-Methane Transition Zone in Continental Margin Sediments (Santa Barbara Basin, California)

(2009) B. K. Harrison et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): abundance and diversity related to geochemical zonation

(2009) Julie Leloup et al.   ENVIRONMENTAL MICROBIOLOGY

The seasonal structure of microbial communities in the Western English Channel

(2009) Jack A. Gilbert et al.   ENVIRONMENTAL MICROBIOLOGY

Vertical distribution and diversity of sulfate-reducing prokaryotes in the Pearl River estuarine sediments, Southern China

(2009) Lijing Jiang et al.   FEMS MICROBIOLOGY ECOLOGY

Biodiversity of benthic microbial communities in bioturbated coastal sediments is controlled by geochemical microniches

(2009) Victoria J Bertics et al.   ISME Journal

Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands

(2009) Simone I Böer et al.   ISME Journal

Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean

(2009) Regina Schauer et al.   ISME Journal

The little bacteria that can - diversity, genomics and ecophysiology of ‘Dehalococcoides’ spp. in contaminated environments

(2009) Neslihan Taş et al.   Microbial Biotechnology

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE