Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping

Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography

(2017) J. R. Stagno et al.   NATURE

Ligand-modulated folding of the full-length adenine riboswitch probed by NMR and single-molecule FRET spectroscopy

(2017) Sven Warhaut et al.   NUCLEIC ACIDS RESEARCH

Cotranscriptional folding of a riboswitch at nucleotide resolution

(2016) Kyle E Watters et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

RNA structure through multidimensional chemical mapping

(2016) Siqi Tian et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Bridging the gap between in vitro and in vivo RNA folding

(2016) Kathleen A. Leamy et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Data-directed RNA secondary structure prediction using probabilistic modeling

(2016) Fei Deng et al.   RNA

Cotranscriptional folding of a riboswitch at nucleotide resolution

(2016) Kyle E Watters et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles

(2015) Seungmyung Lee et al.   BIOINFORMATICS

Multiple conformational states of riboswitches fine-tune gene regulation

(2015) Boris Fürtig et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Joint modeling of RNase footprint sequencing profiles for genome-wide inference of RNA structure

(2015) Chenchen Zou et al.   NUCLEIC ACIDS RESEARCH

Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis

(2015) Pablo Cordero et al.   PLoS Computational Biology

Standardization of RNA Chemical Mapping Experiments

(2014) Wipapat Kladwang et al.   BIOCHEMISTRY

RNA regulons in Hox 5′ UTRs confer ribosome specificity to gene regulation

(2014) Shifeng Xue et al.   NATURE

Speciation of a group I intron into a lariat capping ribozyme

(2014) M. Meyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states

(2014) Siqi Tian et al.   RNA

Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration

(2014) Jinwei Zhang et al.   STRUCTURE

Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch

(2013) Colby D. Stoddard et al.   JOURNAL OF MOLECULAR BIOLOGY

Three-state mechanism couples ligand and temperature sensing in riboswitches

(2013) Anke Reining et al.   NATURE

HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis

(2013) Hanjoo Kim et al.   NUCLEIC ACIDS RESEARCH

Quantitative Dimethyl Sulfate Mapping for Automated RNA Secondary Structure Inference

(2012) Pablo Cordero et al.   BIOCHEMISTRY

An RNA Mapping DataBase for curating RNA structure mapping experiments

(2012) Pablo Cordero et al.   BIOINFORMATICS

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Structure and mechanism of purine-binding riboswitches

(2012) Robert T. Batey   QUARTERLY REVIEWS OF BIOPHYSICS

Ultraviolet Shadowing of RNA Can Cause Significant Chemical Damage in Seconds

(2012) Wipapat Kladwang et al.   Scientific Reports

HiTRACE: high-throughput robust analysis for capillary electrophoresis

(2011) Sungroh Yoon et al.   BIOINFORMATICS

Novel Ligands for a Purine Riboswitch Discovered by RNA-Ligand Docking

(2011) Peter Daldrop et al.   CHEMISTRY & BIOLOGY

A two-dimensional mutate-and-map strategy for non-coding RNA structure

(2011) Wipapat Kladwang et al.   Nature Chemistry

Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism

(2011) Krishna Neupane et al.   NUCLEIC ACIDS RESEARCH

Riboswitch folding: One at a time and step by step

(2011) María Teresa Fernández-Luna et al.   RNA Biology

Comparative Study between Transcriptionally- and Translationally-Acting Adenine Riboswitches Reveals Key Differences in Riboswitch Regulatory Mechanisms

(2011) Jean-François Lemay et al.   PLoS Genetics

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

Riboswitches and the RNA World

(2010) R. R. Breaker   Cold Spring Harbor Perspectives in Biology

Biochemical Features and Functional Implications of the RNA-Based T-Box Regulatory Mechanism

(2009) A. Gutierrez-Preciado et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Riboswitch structure: an internal residue mimicking the purine ligand

(2009) Vanessa Delfosse et al.   NUCLEIC ACIDS RESEARCH

Adaptive Ligand Binding by the Purine Riboswitch in the Recognition of Guanine and Adenine Analogs

(2009) Sunny D. Gilbert et al.   STRUCTURE

Riboswitch RNAs: using RNA to sense cellular metabolism

(2008) T. M. Henkin   GENES & DEVELOPMENT

A Structural Basis for the Recognition of 2′-Deoxyguanosine by the Purine Riboswitch

(2008) Andrea L. Edwards et al.   JOURNAL OF MOLECULAR BIOLOGY

Direct Observation of Hierarchical Folding in Single Riboswitch Aptamers

(2008) W. J. Greenleaf et al.   SCIENCE