Article
Biochemistry & Molecular Biology
Zhi-Zhong Li, Samuli Lehtonen, Karina Martins, Qing-Feng Wang, Jin-Ming Chen
Summary: This study constructed a complete genus-level plastid phylogeny of Alismataceae and updated its historical biogeography, revealing the family's division into three major clades originating in different regions during the Cretaceous period. The mainly temperate clade likely originated from Afrotropical and West Palearctic regions during the Eocene, while the other two clades had their most recent common ancestor in the Neotropical area during the Late Cretaceous. Long-distance dispersal and vicariance played a significant role in the transoceanic distribution of this family.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2022)
Article
Biochemistry & Molecular Biology
Luo Chen, Wei-Tao Jin, Xin-Quan Liu, Xiao-Quan Wang
Summary: This study successfully resolved the intergeneric relationships of Podocarpaceae using a large number of nuclear and chloroplast orthologous groups, and revealed that morphological traits may have promoted its species diversification. Additionally, the results indicate that Podocarpaceae originated in Gondwana and both vicariance and dispersal have contributed to its current biogeographic patterns.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2022)
Article
Biodiversity Conservation
Yingnan Wang, Yu Wang, Yahui Zhao, Alexandra Yu Kravchenko, Juha Merila, Baocheng Guo
Summary: Through whole-genome resequencing data, the phylogeography of Northeast Asian Pungitius sticklebacks was investigated, revealing three new Pungitius species in China and clarifying the colonization sequence and timing of different Pungitius species in Northeast Asia. This study expands our understanding of Pungitius sticklebacks' phylogeography by extending sampling to nearly half of their known distribution area in Northeast Asia.
DIVERSITY AND DISTRIBUTIONS
(2022)
Article
Evolutionary Biology
Ligia R. Benavides, Ricardo Pinto-da-Rocha, Gonzalo Giribet
Summary: The study used transcriptomics and divergence time dating to investigate the phylogeny of the tropical arachnid superfamily Gonyleptoidea. The research found that some subfamilies within Gonyleptidae are not monophyletic, requiring taxonomic revision. Evidence was also shown for a colonization of the temperate zone by Gonyleptidae during the Paleogene period, explaining how a tropical group could colonize extratropical regions.
SYSTEMATIC BIOLOGY
(2021)
Article
Plant Sciences
Yongfu Li, Xuan Li, Shuai Nie, Min Zhang, Qinghua Yang, Wenbin Xu, Yifan Duan, Xianrong Wang
Summary: This study reveals the evolutionary history of the genus Osmanthus and the impact of introgression using multiple sequencing data and analysis approaches.
Article
Biochemistry & Molecular Biology
Weizhao Yang, Nathalie Feiner, Daniele Salvi, Hanna Laakkonen, Daniel Jablonski, Catarina Pinho, Miguel A. Carretero, Roberto Sacchi, Marco A. L. Zuffi, Stefano Scali, Konstantinos Plavos, Panayiotis Pafilis, Nikos Poulakakis, Petros Lymberakis, David Jandzik, Ulrich Schulte, Fabien Aubret, Arnaud Badiane, Guillem Perez I de Lanuza, Javier Abalos, Geoffrey M. While, Tobias Uller
Summary: The study reveals the evolutionary history and genetic structure of common wall lizards using population genomic and phylogenomic analyses, identifying six major lineages and demonstrating the significant impact of Mediterranean geology and climate on the evolutionary history and population genetic structure of extant species.
MOLECULAR BIOLOGY AND EVOLUTION
(2022)
Article
Plant Sciences
Yun Song, Fan Jiang, Junxia Shi, Chaonan Wang, Ning Xiang, Shuifang Zhu
Summary: This study examined the classification and phylogenetic relationships of Phytolacca using the whole chloroplast genome and three markers. The results showed that Phytolacca is monophyletic and that Central America is the center of species diversity. Birds may play a key role in the dispersal of Phytolacca due to the fleshy fruiting of the genus.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Biochemistry & Molecular Biology
Maria Recuerda, Juan Carlos Illera, Guillermo Blanco, Rafael Zardoya, Borja Mila
Summary: This study used phylogenomics and genetic diversity patterns to infer the colonization sequence and timing of mainland common chaffinches to Macaronesia, and assessed whether colonization of different archipelagos led to a species-level radiation. Results revealed a rapid radiation of common chaffinches across Macaronesia, driven by sequential colonization of different archipelagos, resulting in genetically distinct, independent evolutionary lineages.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2021)
Article
Biochemistry & Molecular Biology
Gurusamy Raman, Kyoung-Su Choi, Eun Mi Lee, Clifford W. Morden, Hyeonah Shim, Jong-Soo Kang, Tae-Jin Yang, Seonjoo Park
Summary: This study provides insights into the evolutionary history and biogeography of the tribe Hydrangeeae. It highlights the conserved nature of Hydrangeaceae chloroplast genomes and the differential expression of accD in different sections of the tribe. Phylogenomic analyses reveal the subdivision of the tribe into two clades, with Broussaisia identified as the basal group. The study also provides information about the phylogenetic relationships of Hydrangea petiolaris populations in Jeju and Ulleung Islands.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
(2023)
Article
Biochemistry & Molecular Biology
Qiong Yu, Fu-Sheng Yang, Ya-Xing Chen, Hui Wu, Stefanie M. Ickert-Bond, Xiao-Quan Wang
Summary: By reconstructing the transcriptome-based phylogeny of 19 diploid Ephedra species, the evolutionary history of the gymnosperm genus Ephedra was investigated. The results revealed that Ephedra originated from Mediterranean species and split into three clades: American species, E. rhytidosperma, and other Asian species. Reticulate evolution was found to be common in Ephedra, and the genus likely originated in the late Cretaceous along the Tethys coast.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY
(2023)
Article
Entomology
Shauna L. Price, Benjamin D. Blanchard, Scott Powell, Bonnie B. Blaimer, Corrie S. Moreau
Summary: Recent advances in phylogenomics were used to investigate diversification and geographic range evolution in the turtle ant genus Cephalotes. The study found that the uplift of the Panamanian land bridge played a significant role in shaping the evolution of this group, while there was no evidence for the existence of the GAARlandia land bridge. Taxonomic sampling was also shown to influence macroevolutionary inferences.
INSECT SYSTEMATICS AND DIVERSITY
(2022)
Article
Biochemistry & Molecular Biology
Eranga Wettewa, Lisa E. Wallace
Summary: Platanthera, one of the largest genera of temperate orchids, has adaptively radiated into diverse habitats in North America, Asia, Europe, North Africa, Borneo, and Sarawak. A new molecular toolkit was developed to study Platanthera, revealing the ancestry of subgenus Limnorchis originating in western North America approximately 3-4.5 million years ago. The study suggests complex biogeographic connections between Asia and North America within the genus.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2021)
Article
Multidisciplinary Sciences
Anna N. Neretina, Dmitry P. Karabanov, Veronika Sacherova, Alexey A. Kotov
Summary: Representatives of the genus Alonella Sars are some of the smallest known water fleas, with poorly studied diversity. Genetic analysis revealed at least twelve divergent phylogenetic lineages, indicating a higher potential species diversity than traditionally accepted. This genetic data provides a background for further morphological analyses and detailed phylogeographical studies.
Article
Biochemistry & Molecular Biology
Felix Vaux, Elahe Parvizi, Dave Craw, Ceridwen Fraser, Jonathan M. Waters
Summary: Large-scale disturbance events can shape biodiversity patterns by generating distinct spatial sectors of genetic diversity within a species. This study investigated the impact of the 1855 Wairarapa earthquake on the genetic diversity of Durvillaea antarctica in the intertidal zone of New Zealand. The results highlight the presence of two parapatric spatial-genomic sectors and support the hypothesis that competing lineage expansions can lead to striking spatial structuring of genetic diversity.
Article
Biochemistry & Molecular Biology
Matej Dolinay, Tadeas Necas, Breda M. Zimkus, Andreas Schmitz, Eric B. Fokam, Emily Moriarty Lemmon, Alan R. Lemmon, Vaclav Gvozdik
Summary: Through genomic sequence capture analysis and morphological examination, this study investigated six mtDNA lineages of the Puddle frogs species complex, revealing two divergent evolutionary lineages. The study also revealed the presence of hybridization within the species complex, forming a ladder-like phylogenetic pattern in phylogenomic analyses.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2021)
Article
Biochemistry & Molecular Biology
Li-E Yang, Ying Meng, De-Li Peng, Ze-Long Nie, Hang Sun
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2018)
Review
Plant Sciences
A. J. Harris, Stefanie Ickert-Bond, Aaron Rodriguez
JOURNAL OF SYSTEMATICS AND EVOLUTION
(2018)
Article
Biochemistry & Molecular Biology
Ying Jiang, Min Gao, Ying Meng, Jun Wen, Xue-Jun Ge, Ze-Long Nie
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2019)
Article
Plant Sciences
Meng-Hua Zhang, Chao-Yong Wang, Cheng Zhang, Dai-Gui Zhang, Ke-Gang Li, Ze-Long Nie, Ying Meng
JOURNAL OF SYSTEMATICS AND EVOLUTION
(2020)
Article
Plant Sciences
Yu-Bing Wang, Bin-Bin Liu, Ze-Long Nie, Hong-Feng Chen, Fa-Ju Chen, Richard B. Figlar, Jun Wen
JOURNAL OF SYSTEMATICS AND EVOLUTION
(2020)
Article
Evolutionary Biology
Veronica S. Di Stilio, Stefanie M. Ickert-Bond
Summary: Established model systems in flowering plants have advanced research in plant developmental biology, but overreliance on a limited number of organisms poses a barrier for future evolutionary developmental biology. The lack of gymnosperm model systems hinders the study of seed plant character evolution.
EVOLUTION & DEVELOPMENT
(2021)
Article
Sociology
Else Demeulenaere, Sveta Yamin-Pasternak, Donald H. Rubinstein, Amy Lauren Lovecraft, Stefanie M. Ickert-Bond
Summary: The research found that Micronesian people express interspecies relationships through rituals and oral history guides in Belau (Palau) and Wa'ab (Yap) which inform ethnobotanical practices. The leguminous tree Serianthes is critically endangered on Guahan (Guam) and Luta (Rota); in Luta, it is celebrated as a flagship species for endangered plant recovery, while the last tree in Guahan has become a rallying point for spiritual resistance.
Review
Plant Sciences
Else Demeulenaere, Stefanie M. Ickert-Bond
Summary: Micronesian islands taxa exhibit high levels of endemism, but little is known about their biogeographical histories. Recent increase in molecular biogeographic data allowed researchers to answer fundamental biogeography questions for the first time, confirming the importance of long-distance dispersal mechanisms for plant propagules. This study identified dominant dispersal scenarios for the Micronesian biota and reconstructed historical dispersal patterns from source areas estimated between the Eocene and the Miocene to dispersal into Micronesia between the Miocene and the Pleistocene.
JOURNAL OF SYSTEMATICS AND EVOLUTION
(2022)
Article
Biochemistry & Molecular Biology
Lei Duan, Shi-Jin Li, Chun Su, Yotsawate Sirichamorn, Li-Na Han, Wen Ye, Phan Ke Loc, Jun Wen, James A. Compton, Brian Schrire, Ze-Long Nie, Hong-Feng Chen
Summary: This study reconstructs the phylogenomic framework of the IRLC, inferring the inter-generic relationships and historical biogeography of Wisterieae. The Chloroplast capture scenario is proposed as a plausible explanation for topological incongruences in certain clades. Biogeographic analyses suggest an origin of Wisterieae in the late Eocene, with subsequent migrations and dispersals observed in different regions over time.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2021)
Article
Plant Sciences
Zhi-Yao Ma, Ze-Long Nie, Xiu-Qun Liu, Jing-Pu Tian, Yong-Feng Zhou, Elizabeth Zimmer, Jun Wen
Summary: East Asian wild grapes, with their high species diversity, are recognized as important germplasm resources for the grape industry. However, the phylogenetic relationships and drivers of diversification of East Asian Vitis need further understanding. This study uses nuclear and plastid genome data to explore the phylogenetic relationships of East Asian Vitis and identifies hybridization events and ecological drivers of diversification.
JOURNAL OF SYSTEMATICS AND EVOLUTION
(2023)
Article
Biochemistry & Molecular Biology
Li-E Yang, Lu Sun, De-Li Peng, Guang-Jie Chen, Hang Sun, Ze-Long Nie
Summary: The global herbaceous flora is shaped by ancient and recent diversification, as well as geographic differences between the Northern and Southern Hemispheres. This study focuses on the Rubieae tribe, which provides an excellent opportunity to study the macroevolution of worldwide colonization. The results show that Rubieae originated in Europe, with the two subtribes separating 26.8 million years ago. The tribe exhibits complex migration patterns within the Northern Hemisphere and recent dispersals into the Southern Hemisphere.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2022)
Article
Biochemistry & Molecular Biology
Ze-Long Nie, Richard Hodel, Zhi-Yao Ma, Gabriel Johnson, Chen Ren, Ying Meng, Stefanie M. Ickert-Bond, Xiu-Qun Liu, Elizabeth Zimmer, Jun Wen
Summary: The north temperate region had a warm climate and a rich thermophilic flora before the Eocene, but the early diversifications of the temperate biome under global climate change and biome shift are not well understood. Hybridization/introgression is an important driving force of speciation in plant diversity. In this study, we analyzed genomic data from the New World Vitis, a temperate North American flora, and found strong evidence for widespread incongruence and reticulate evolution among nuclear genes within both recent and ancient lineages.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Qiong Yu, Fu-Sheng Yang, Ya-Xing Chen, Hui Wu, Stefanie M. Ickert-Bond, Xiao-Quan Wang
Summary: By reconstructing the transcriptome-based phylogeny of 19 diploid Ephedra species, the evolutionary history of the gymnosperm genus Ephedra was investigated. The results revealed that Ephedra originated from Mediterranean species and split into three clades: American species, E. rhytidosperma, and other Asian species. Reticulate evolution was found to be common in Ephedra, and the genus likely originated in the late Cretaceous along the Tethys coast.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY
(2023)
Article
Plant Sciences
Ran Meng, Ying Meng, Yong-Ping Yang, Ze-Long Nie
Summary: Maianthemum is a genus with over 35 species, widely distributed in North to Central Americas and eastern Asia, with unclear phylogenetic relationships within the SW China Glade. This study revealed the fast radiation of the SW China Glade in the eastern Himalayas, followed by subsequent radiation in the Hengduan Mountains, showing complex evolutionary patterns within the genus in the region.