Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups

Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease

(2017) Michael D. Mayers et al.   JOURNAL OF PROTEOME RESEARCH

A comprehensive and scalable database search system for metaproteomics

(2016) Sandip Chatterjee et al.   BMC GENOMICS

Cytokine responses and epithelial function in the intestinal mucosa

(2016) Joseph C. Onyiah et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Development of an Integrated Pipeline for Profiling Microbial Proteins from Mouse Fecal Samples by LC–MS/MS

(2016) Jing Wu et al.   JOURNAL OF PROTEOME RESEARCH

2016 update of the PRIDE database and its related tools

(2016) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Antimicrobial Defense of the Intestine

(2015) Sohini Mukherjee et al.   IMMUNITY

Comparative analysis of statistical methods used for detecting differential expression in label-free mass spectrometry proteomics

(2015) Sarah R. Langley et al.   Journal of Proteomics

Intestinal Microbiota Signatures Associated with Inflammation History in Mice Experiencing Recurring Colitis

(2015) David Berry et al.   Frontiers in Microbiology

Inflammatory Bowel Disease as a Model for Translating the Microbiome

(2014) Curtis Huttenhower et al.   IMMUNITY

Microbiota activation and regulation of innate and adaptive immunity

(2014) Katie L. Alexander et al.   IMMUNOLOGICAL REVIEWS

The microbial basis of inflammatory bowel diseases

(2014) Sushila R. Dalal et al.   JOURNAL OF CLINICAL INVESTIGATION

Innate and Adaptive Immunity Interact to Quench Microbiome Flagellar Motility in the Gut

(2013) Tyler C. Cullender et al.   Cell Host & Microbe

Diet, microbes, and host genetics: the perfect storm in inflammatory bowel diseases

(2013) Vanessa Leone et al.   JOURNAL OF GASTROENTEROLOGY

Host-Derived Nitrate Boosts Growth of E. coli in the Inflamed Gut

(2013) S. E. Winter et al.   SCIENCE

From genetics of inflammatory bowel disease towards mechanistic insights

(2013) Daniel B. Graham et al.   TRENDS IN IMMUNOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Pro-Inflammatory S100A8 and S100A9 Proteins: Self-Assembly into Multifunctional Native and Amyloid Complexes

(2012) Thomas Vogl et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis

(2012) David Berry et al.   ISME Journal

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions

(2012) Carolin A. Kolmeder et al.   PLoS One

Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease

(2012) Alison R. Erickson et al.   PLoS One

Interaction between Susceptibility and Environment: Examples from the Digestive Tract

(2011) Gerhard Rogler   DIGESTIVE DISEASES

S100A8 and S100A9: New Insights into Their Roles in Malignancy

(2011) Geetha Srikrishna   Journal of Innate Immunity

A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface

(2011) Xiaoxiao Li et al.   PLoS One

Virus-Plus-Susceptibility Gene Interaction Determines Crohn's Disease Gene Atg16L1 Phenotypes in Intestine

(2010) Ken Cadwell et al.   CELL

Monitoring disease activity by stool analyses: from occult blood to molecular markers of intestinal inflammation and damage

(2009) D Foell et al.   GUT

T cell transfer model of chronic colitis: concepts, considerations, and tricks of the trade

(2008) Dmitry V. Ostanin et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Shotgun metaproteomics of the human distal gut microbiota

(2008) Nathan C Verberkmoes et al.   ISME Journal

Therapeutic correction of bacterial dysbiosis discovered by molecular techniques

(2008) R. B. Sartor   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Antibiotic-Responsive Mouse Model of Fulminant Ulcerative Colitis

(2008) Silvia S Kang et al.   PLOS MEDICINE