Genome-wide identification and characterization of mRNAs and lncRNAs involved in cold stress in the wild banana (Musa itinerans)

Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance toPhytophthora infestansby co-expressing glutaredoxin

(2017) Jun Cui et al.   PLANT JOURNAL

A Nucleus-Localized Long Non-Coding RNA Enhances Drought and Salt Stress Tolerance

(2017) Tao Qin et al.   PLANT PHYSIOLOGY

Comparative Phosphoproteomics Reveals an Important Role of MKK2 in Banana (Musa spp.) Cold Signal Network

(2017) Jie Gao et al.   Scientific Reports

RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats

(2017) Halise Busra Cagirici et al.   Scientific Reports

Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes

(2017) Zupeng Wang et al.   Scientific Reports

Corrigendum: Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava

(2017) Shuxia Li et al.   Scientific Reports

Long noncoding RNAs in the model species Brachypodium distachyon

(2017) Concetta De Quattro et al.   Scientific Reports

Spatio-temporal analysis of coding and long noncoding transcripts during maize endosperm development

(2017) Eun-Deok Kim et al.   Scientific Reports

Survey of High Throughput RNA-Seq Data Reveals Potential Roles for lncRNAs during Development and Stress Response in Bread Wheat

(2017) Shumayla et al.   Frontiers in Plant Science

Genome-wide screening and characterization of long non-coding RNAs involved in flowering development of trifoliate orange (Poncirus trifoliata L. Raf.)

(2017) Chen-Yang Wang et al.   Scientific Reports

Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection

(2016) Stanford Kwenda et al.   BMC GENOMICS

Transcriptome Profiling of Two Asparagus Bean (Vigna unguiculata subsp. sesquipedalis) Cultivars Differing in Chilling Tolerance under Cold Stress

(2016) Huaqiang Tan et al.   PLoS One

Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus

(2016) Raj Kumar Joshi et al.   PLoS One

Deep sequencing-based characterization of transcriptome of trifoliate orange (Poncirus trifoliata (L.) Raf.) in response to cold stress

(2015) Min Wang et al.   BMC GENOMICS

Comparative transcriptomics analysis reveals difference of key gene expression between banana and plantain in response to cold stress

(2015) Qiao-Song Yang et al.   BMC GENOMICS

Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

(2015) Shamila Weerakoon Abeynayake et al.   BMC PLANT BIOLOGY

Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress

(2015) Bin Bai et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening

(2015) Benzhong Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

The landscape of long noncoding RNAs in the human transcriptome

(2015) Matthew K Iyer et al.   NATURE GENETICS

Long noncoding RNA transcriptome of plants

(2015) Jun Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide screening for novel, drought stress-responsive long non-coding RNAs in drought-stressed leaf transcriptome of drought-tolerant and -susceptible banana (Musa spp) cultivars using Illumina high-throughput sequencing

(2015) M. Muthusamy et al.   Plant Biotechnology Reports

The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms

(2015) Rubén Gustavo Schlaen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species

(2015) Hadas Hezroni et al.   Cell Reports

Molecular cloning and expression analysis of KIN10 and cold-acclimation related genes in wild banana ‘Huanxi’ (Musa itinerans)

(2015) Weihua Liu et al.   SpringerPlus

Genome-Wide Identification, Characterization and Evolutionary Analysis of Long Intergenic Noncoding RNAs in Cucumber

(2015) Zhiqiang Hao et al.   PLoS One

Transcriptome profiling of the cold response and signaling pathways in Lilium lancifolium

(2014) Jingmao Wang et al.   BMC GENOMICS

Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa

(2014) Peng Shuai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes

(2013) Pankaj Barah et al.   BMC GENOMICS

“A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids”

(2013) Mark W Davey et al.   BMC GENOMICS

Alternative splicing of transcription factors in plant responses to low temperature stress: mechanisms and functions

(2013) Pil Joon Seo et al.   PLANTA

Genome-Wide Survey of Cold Stress Regulated Alternative Splicing in Arabidopsis thaliana with Tiling Microarray

(2013) Noam Leviatan et al.   PLoS One

Global Analysis of Transcriptome Responses and Gene Expression Profiles to Cold Stress of Jatropha curcas L.

(2013) Haibo Wang et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

The R2R3-MYB, bHLH, WD40, and related transcription factors in flavonoid biosynthesis

(2012) Lei Zhao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Quantitative Proteomic Analysis Reveals that Antioxidation Mechanisms Contribute to Cold Tolerance in Plantain (Musa paradisiacaL.; ABB Group) Seedlings

(2012) Qiao-Song Yang et al.   MOLECULAR & CELLULAR PROTEOMICS

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

(2011) Mingming Xin et al.   BMC PLANT BIOLOGY

Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution

(2011) Igor Ulitsky et al.   CELL

TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds

(2011) Ingo Appelhagen et al.   PLANT JOURNAL

Alternative splicing: Enhancing ability to cope with stress via transcriptome plasticity

(2011) Anna M. Mastrangelo et al.   PLANT SCIENCE

Improved tolerance toward low temperature in banana (Musa AAA Group Cavendish Williams)

(2011) J.Z. Zhang et al.   SOUTH AFRICAN JOURNAL OF BOTANY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

The Impact of Water Deficiency on Leaf Cuticle Lipids of Arabidopsis

(2009) D. K. Kosma et al.   PLANT PHYSIOLOGY

PtFLC homolog from trifoliate orange (Poncirus trifoliata) is regulated by alternative splicing and experiences seasonal fluctuation in expression level

(2009) Jin-Zhi Zhang et al.   PLANTA