Alternative splicing of transcription factors in plant responses to low temperature stress: mechanisms and functions

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

(2012) Sergei A Filichkin et al.   Biology Direct

Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis

(2012) Yamile Marquez et al.   GENOME RESEARCH

Biogenesis, functions and fate of plant microRNAs

(2012) Afsar Raza Naqvi et al.   JOURNAL OF CELLULAR PHYSIOLOGY

A competitive peptide inhibitor KIDARI negatively regulates HFR1 by forming nonfunctional heterodimers in Arabidopsis photomorphogenesis

(2012) Shin-Young Hong et al.   MOLECULES AND CELLS

The genetic basis of flowering responses to seasonal cues

(2012) Fernando Andrés et al.   NATURE REVIEWS GENETICS

The non-DNA-binding bHLH transcription factor PRE3/bHLH135/ATBS1/TMO7 is involved in the regulation of light signaling pathway in Arabidopsis

(2012) Mathieu Castelain et al.   PHYSIOLOGIA PLANTARUM

Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes

(2012) A. B. James et al.   PLANT CELL

SKIP Is a Component of the Spliceosome Linking Alternative Splicing and the Circadian Clock in Arabidopsis

(2012) X. Wang et al.   PLANT CELL

A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses inArabidopsis

(2012) Pil Joon Seo et al.   PLANT CELL

Predicting the Impact of Alternative Splicing on Plant MADS Domain Protein Function

(2012) Edouard I. Severing et al.   PLoS One

Genome-Wide Identification and Characterization of R2R3MYB Family in Cucumis sativus

(2012) Qiang Li et al.   PLoS One

Colinearity and Similar Expression Pattern of Rice DREB1s Reveal Their Functional Conservation in the Cold-Responsive Pathway

(2012) Donghai Mao et al.   PLoS One

Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa

(2012) Q. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative splicing in plants – coming of age

(2012) Naeem H. Syed et al.   TRENDS IN PLANT SCIENCE

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis

(2011) Maria Kalyna et al.   NUCLEIC ACIDS RESEARCH

Alternative splicing: Enhancing ability to cope with stress via transcriptome plasticity

(2011) Anna M. Mastrangelo et al.   PLANT SCIENCE

ESKIMO1 Disruption in Arabidopsis Alters Vascular Tissue and Impairs Water Transport

(2011) Valérie Lefebvre et al.   PLoS One

CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis

(2011) M. A. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Competitive inhibition of transcription factors by small interfering peptides

(2011) Pil Joon Seo et al.   TRENDS IN PLANT SCIENCE

Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism

(2011) Pil Joon Seo et al.   Nature Communications

Regulation of protein function by ‘microProteins’

(2010) Annica-Carolin Staudt et al.   EMBO REPORTS

A systems biology approach for the analysis of carbohydrate dynamics during acclimation to low temperature in Arabidopsis thaliana

(2010) Thomas Nägele et al.   FEBS Journal

Nuclear Import and DNA Binding of the ZHD5 Transcription Factor Is Modulated by a Competitive Peptide Inhibitor inArabidopsis

(2010) Shin-Young Hong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes

(2010) Satoko Matsukura et al.   MOLECULAR GENETICS AND GENOMICS

The Arabidopsis Floral Homeotic Proteins APETALA3 and PISTILLATA Negatively Regulate the BANQUO Genes Implicated in Light Signaling

(2010) C. D. Mara et al.   PLANT CELL

Alternative Splicing at a NAGNAG Acceptor Site as a Novel Phenotype Modifier

(2010) Alexandre Hinzpeter et al.   PLoS Genetics

Vernalization: Winter and the Timing of Flowering in Plants

(2009) Dong-Hwan Kim et al.   Annual Review of Cell and Developmental Biology

Execution of nonsense-mediated mRNA decay: what defines a substrate?

(2009) Indrani Rebbapragada et al.   CURRENT OPINION IN CELL BIOLOGY

Inhibition of the shade avoidance response by formation of non-DNA binding bHLH heterodimers

(2009) Patricia Hornitschek et al.   EMBO JOURNAL

Splicing Variation at a FLOWERING LOCUS C Homeolog Is Associated With Flowering Time Variation in the Tetraploid Capsella bursa-pastoris

(2009) T. Slotte et al.   GENETICS

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay

(2009) Saiprasad G. Palusa et al.   NEW PHYTOLOGIST

Aberrant mRNA Transcripts and the Nonsense-Mediated Decay Proteins UPF2 and UPF3 Are Enriched in the Arabidopsis Nucleolus

(2009) S. H. Kim et al.   PLANT CELL

Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves

(2009) Ling Li et al.   PLANT JOURNAL

PtFLC homolog from trifoliate orange (Poncirus trifoliata) is regulated by alternative splicing and experiences seasonal fluctuation in expression level

(2009) Jin-Zhi Zhang et al.   PLANTA

Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis

(2009) Y. Kurihara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes

(2008) Stefanie Schindler et al.   BMC GENOMICS

Genome-wide analyses of alternative splicing in plants: Opportunities and challenges

(2008) W. B. Barbazuk et al.   GENOME RESEARCH

Phylogenetic Analysis of the Plant-specificZinc Finger-HomeoboxandMini Zinc FingerGene Families

(2008) Wei Hu et al.   Journal of Integrative Plant Biology

HD-ZIP III Activity Is Modulated by Competitive Inhibitors via a Feedback Loop in Arabidopsis Shoot Apical Meristem Development

(2008) Y.-S. Kim et al.   PLANT CELL

HFR1 Is Crucial for Transcriptome Regulation in the Cryptochrome 1-Mediated Early Response to Blue Light in Arabidopsis thaliana

(2008) Xiao-Ning Zhang et al.   PLoS One

Small RNA metabolism in Arabidopsis

(2008) Vanitharani Ramachandran et al.   TRENDS IN PLANT SCIENCE