Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection
出版年份 2016 全文链接
标题
Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection
作者
关键词
Noncoding RNA, Potato, <em class=EmphasisTypeItalic >Pectobacterium</em>, lincRNA, Plant defence, Soft rot bacteria, <em class=EmphasisTypeItalic >Solanum tuberosum</em>, Entereobacteria
出版物
BMC GENOMICS
Volume 17, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-08-11
DOI
10.1186/s12864-016-2967-9
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening
- (2015) Benzhong Zhu et al. JOURNAL OF EXPERIMENTAL BOTANY
- Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypiumspp.)
- (2015) Maojun Wang et al. NEW PHYTOLOGIST
- GREENC: a Wiki-based database of plant lncRNAs
- (2015) Andreu Paytuví Gallart et al. NUCLEIC ACIDS RESEARCH
- PANTHER version 10: expanded protein families and functions, and analysis tools
- (2015) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- Long Non-coding RNAs and Their Biological Roles in Plants
- (2015) Xue Liu et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- RNA regulatory networks in animals and plants: a long noncoding RNA perspective
- (2014) Y. Bai et al. Briefings in Functional Genomics
- Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis
- (2014) Florian Bardou et al. DEVELOPMENTAL CELL
- Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa
- (2014) Peng Shuai et al. JOURNAL OF EXPERIMENTAL BOTANY
- Identification of microRNAs in six solanaceous plants and their potential link with phosphate and mycorrhizal signaling
- (2014) Mian Gu et al. Journal of Integrative Plant Biology
- PNRD: a plant non-coding RNA database
- (2014) Xin Yi et al. NUCLEIC ACIDS RESEARCH
- Arabidopsis RRP6L1 and RRP6L2 Function in FLOWERING LOCUS C Silencing via Regulation of Antisense RNA Synthesis
- (2014) Jun-Hye Shin et al. PLoS Genetics
- Genome-wide discovery and characterization of maize long non-coding RNAs
- (2014) Lin Li et al. GENOME BIOLOGY
- Long non-coding RNA-dependent transcriptional regulation in neuronal development and disease
- (2014) Brian S. Clark et al. Frontiers in Genetics
- Long noncoding RNAs: New regulators in plant development
- (2013) Yu-Chan Zhang et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- PLncDB: plant long non-coding RNA database
- (2013) J. Jin et al. BIOINFORMATICS
- lincRNAs: Genomics, Evolution, and Mechanisms
- (2013) Igor Ulitsky et al. CELL
- Long noncoding RNAs responsive toFusarium oxysporuminfection inArabidopsis thaliana
- (2013) Qian-Hao Zhu et al. NEW PHYTOLOGIST
- Colonization Patterns of an mCherry-TaggedPectobacterium carotovorumsubsp.brasilienseStrain in Potato Plants
- (2013) Gugulethu C. Kubheka et al. PHYTOPATHOLOGY
- Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing
- (2013) Xin Qi et al. PLANT MOLECULAR BIOLOGY
- Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants
- (2013) H.-J. Wu et al. PLANT PHYSIOLOGY
- Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing
- (2013) Runxuan Zhang et al. PLoS One
- On the classification of long non-coding RNAs
- (2013) Lina Ma et al. RNA Biology
- Towards revealing the functions of all genes in plants
- (2013) Seung Yon Rhee et al. TRENDS IN PLANT SCIENCE
- The role of long non-coding RNA in transcriptional gene silencing
- (2012) Andrzej T Wierzbicki CURRENT OPINION IN PLANT BIOLOGY
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis
- (2012) J. Liu et al. PLANT CELL
- Computational Identification and Functional Predictions of Long Noncoding RNA in Zea mays
- (2012) Susan Boerner et al. PLoS One
- MicroRNA regulation of plant innate immune receptors
- (2012) F. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Proteinortho: Detection of (Co-)orthologs in large-scale analysis
- (2011) Marcus Lechner et al. BMC BIOINFORMATICS
- Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing
- (2011) Mingming Xin et al. BMC PLANT BIOLOGY
- psRNATarget: a plant small RNA target analysis server
- (2011) Xinbin Dai et al. NUCLEIC ACIDS RESEARCH
- Exploring long non-coding RNAs through sequencing
- (2011) Sophie R. Atkinson et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Long noncoding RNA: unveiling hidden layer of gene regulatory networks
- (2011) Eun-Deok Kim et al. TRENDS IN PLANT SCIENCE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Identification, characterization and expression analysis of MicroRNAs and their targets in the potato (Solanum tuberosum)
- (2010) Fuliang Xie et al. GENE
- Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA
- (2010) J. B. Heo et al. SCIENCE
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Computational prediction of novel non-coding RNAs in Arabidopsis thaliana
- (2009) Dandan Song et al. BMC BIOINFORMATICS
- Pectobacterium carotovorum subsp. brasiliensis causing blackleg on potatoes in South Africa
- (2009) Johanna J. van der Merwe et al. EUROPEAN JOURNAL OF PLANT PATHOLOGY
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
- (2009) Szymon Swiezewski et al. NATURE
- Long non-coding RNAs: insights into functions
- (2009) Tim R. Mercer et al. NATURE REVIEWS GENETICS
- Computational identification of 48 potato microRNAs and their targets
- (2008) Wenwei Zhang et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
- (2008) B. Ben Amor et al. GENOME RESEARCH
- Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’
- (2007) Kazuki Saito et al. TRENDS IN PLANT SCIENCE
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