Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels

Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach

(2017) Stephen R. Lindemann et al.   Frontiers in Microbiology

Establishment of a multi-species biofilm model and metatranscriptomic analysis of biofilm and planktonic cell communities

(2016) Yuya Nakamura et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The ecology and biogeochemistry of stream biofilms

(2016) Tom J. Battin et al.   NATURE REVIEWS MICROBIOLOGY

Scaling laws predict global microbial diversity

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Light availability affects stream biofilm bacterial community composition and function, but not diversity

(2015) Karoline Wagner et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic and Metatranscriptomic Analyses of Bacterial Communities Derived From a Calcifying Karst Water Creek Biofilm and Tufa

(2015) Dominik Schneider et al.   GEOMICROBIOLOGY JOURNAL

Metatranscriptomic census of active protists in soils

(2015) Stefan Geisen et al.   ISME Journal

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

(2015) S. A. Amin et al.   NATURE

Metatranscriptome analyses indicate resource partitioning between diatoms in the field

(2015) Harriet Alexander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis

(2015) Susan Yost et al.   Genome Medicine

Functional and Structural Responses of Hyporheic Biofilms to Varying Sources of Dissolved Organic Matter

(2014) Karoline Wagner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic Analysis of Arctic Peat Soil Microbiota

(2014) Alexander T. Tveit et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Shifts in microbial community structure and function in light- and dark-grown biofilms driven by warming

(2014) Anna M. Romaní et al.   ENVIRONMENTAL MICROBIOLOGY

Climate warming and agricultural stressors interact to determine stream periphyton community composition

(2014) Jeremy J. Piggott et al.   GLOBAL CHANGE BIOLOGY

Pathogens and insect herbivores drive rainforest plant diversity and composition

(2014) Robert Bagchi et al.   NATURE

Mycoloop: chytrids in aquatic food webs

(2014) Maiko Kagami et al.   Frontiers in Microbiology

Metagenome Survey of a Multispecies and Alga-Associated Biofilm Revealed Key Elements of Bacterial-Algal Interactions in Photobioreactors

(2013) Ines Krohn-Molt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Headwaters are critical reservoirs of microbial diversity for fluvial networks

(2013) K. Besemer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Diel gene expression profiles of a phosphorus limited mountain lake using metatranscriptomics

(2012) Maria Vila-Costa et al.   ENVIRONMENTAL MICROBIOLOGY

Effect of Periodontal Pathogens on the Metatranscriptome of a Healthy Multispecies Biofilm Model

(2012) J. Frias-Lopez et al.   JOURNAL OF BACTERIOLOGY

Exploring the molecular basis of responses to light in marine diatoms

(2012) F. A. Depauw et al.   JOURNAL OF EXPERIMENTAL BOTANY

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

CREST – Classification Resources for Environmental Sequence Tags

(2012) Anders Lanzén et al.   PLoS One

Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability

(2012) A. Marchetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Light, nutrients and the fatty acid composition of stream periphyton

(2011) WALTER R. HILL et al.   FRESHWATER BIOLOGY

Effects of understory removal and tree girdling on soil microbial community composition and litter decomposition in two Eucalyptus plantations in South China

(2011) Jianping Wu et al.   FUNCTIONAL ECOLOGY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Discovery of novel intermediate forms redefines the fungal tree of life

(2011) Meredith D. M. Jones et al.   NATURE

Applying the light : nutrient hypothesis to stream periphyton

(2010) SHARI E. FANTA et al.   FRESHWATER BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Availability of glucose and light modulates the structure and function of a microbial biofilm

(2009) Irene Ylla et al.   FEMS MICROBIOLOGY ECOLOGY

Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans

(2009) H. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tree girdling provides insight on the role of labile carbon in nitrogen partitioning between soil microorganisms and adult European beech

(2009) Michael Dannenmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Covariation of stream community structure and biomass of algae, invertebrates and fish with forest cover at multiple spatial scales

(2008) JAYNIE M. STEPHENSON et al.   FRESHWATER BIOLOGY

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

A Significant Upward Shift in Plant Species Optimum Elevation During the 20th Century

(2008) J. Lenoir et al.   SCIENCE